Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,709,636 |
T→A |
R187R (CGT→CGA) |
nadB → |
quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,709,636 | 0 | T | A | 100.0%
| 115.2
/ NA
| 64 | R187R (CGT→CGA) | nadB | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (64/0); total (64/0) |
GAACCGTAATAAAGAAACGGTGGAAACCTGCCACGCAAAAGCGGTGGTGC > W3110S.gb/2709630‑2709679
|
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGc > 1:36078/1‑42 (MQ=38)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:69277/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:10035/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:47672/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:49129/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:51369/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:53428/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:56919/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:57484/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:60627/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:60896/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:61201/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:62095/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:64817/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:67206/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:69242/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:42694/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:70436/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:71097/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:74180/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:77322/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:77900/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:81033/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:81324/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:83349/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:85431/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:85540/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:85572/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:85751/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:85761/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:87454/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:24758/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:10610/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:10730/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:10824/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:1174/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:11945/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:15234/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:15941/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:17435/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:19254/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:21855/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:22333/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:23188/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:24528/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:39813/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:32591/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:38438/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:36817/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:36125/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:3423/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:33910/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:32956/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:24984/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:32480/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:29245/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:29236/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:29147/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggtac > 1:26626/1‑48 (MQ=255)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggta > 1:85053/1‑48 (MQ=38)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggta > 1:33066/1‑48 (MQ=38)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggta > 1:75659/1‑48 (MQ=38)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggta > 1:24067/1‑48 (MQ=38)
gAACCGAAATAAAGAAACGGTTGAAACCTGCCACGCAAAAGCagtggta > 1:67534/1‑48 (MQ=38)
|
GAACCGTAATAAAGAAACGGTGGAAACCTGCCACGCAAAAGCGGTGGTGC > W3110S.gb/2709630‑2709679
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
