Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,031,180 |
A→C |
T7T (ACT→ACG) |
yhhQ ← |
conserved inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,031,180 | 0 | A | C | 100.0%
| 79.8
/ NA
| 44 | T7T (ACT→ACG) | yhhQ | conserved inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (0/44); total (0/44) |
ATAGCGTTGAGTTTGCGAGAAAACGTTCATATTGTACCTT > W3110S.gb/4031171‑4031210
|
ataGCGTTGCGTTTGCGAGTAAACGTTCATATTGTACCtt < 1:4277/40‑1 (MQ=38)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:73461/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:59585/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:60873/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:60937/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:61279/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:63503/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:64736/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:70917/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:71202/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:71205/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:71704/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:57316/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:74263/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:75067/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:75915/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:76046/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:80409/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:81927/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:82504/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:8368/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:8517/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:85499/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:37667/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:12210/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:14195/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:16307/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:19450/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:19562/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:21062/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:21073/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:28528/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:32095/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:35010/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:10645/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:44267/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:45367/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:46647/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:47529/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:53654/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:54231/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:54669/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:55321/40‑1 (MQ=255)
ataGCGTTGCGTTTGCGAGAAAACGTTCATATTGTACCtt < 1:55821/40‑1 (MQ=255)
|
ATAGCGTTGAGTTTGCGAGAAAACGTTCATATTGTACCTT > W3110S.gb/4031171‑4031210
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
