Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,373,316 |
G→T |
intergenic (‑307/‑30) |
aspA ← / → fxsA |
aspartate ammonia‑lyase/inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,373,316 | 0 | G | T | 100.0%
| 13.7
/ NA
| 11 | intergenic (‑307/‑30) | aspA/fxsA | aspartate ammonia‑lyase/inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (0/11); total (0/11) |
AATATAAGCTAAACGCGATTCGCAACCCATTCAGGTAGCCGGGGTTAACCGGCTGCTATTAC > W3110S.gb/4373273‑4373334
|
aaTATAAGCTAAACGCGATTCGCAACCCATTCAGGTAGCCGGGTTTAACCGGCTGCTATTAc < 1:16864/62‑1 (MQ=255)
aaTATAAGCTAAACGCGATTCGCAACCCATTCAGGTAGCCGGGTTTAACCGGCTGCTATTAc < 1:24431/62‑1 (MQ=255)
aaTATAAGCTAAACGCGATTCGCAACCCATTCAGGTAGCCGGGTTTAACCGGCTGCTATTAc < 1:25190/62‑1 (MQ=255)
aaTATAAGCTAAACGCGATTCGCAACCCATTCAGGTAGCCGGGTTTAACCGGCTGCTATTAc < 1:37608/62‑1 (MQ=255)
aaTATAAGCTAAACGCGATTCGCAACCCATTCAGGTAGCCGGGTTTAACCGGCTGCTATTAc < 1:41991/62‑1 (MQ=255)
aaTATAAGCTAAACGCGATTCGCAACCCATTCAGGTAGCCGGGTTTAACCGGCTGCTATTAc < 1:45024/62‑1 (MQ=255)
aaTATAAGCTAAACGCGATTCGCAACCCATTCAGGTAGCCGGGTTTAACCGGCTGCTATTAc < 1:51552/62‑1 (MQ=255)
aaTATAAGCTAAACGCGATTCGCAACCCATTCAGGTAGCCGGGTTTAACCGGCTGCTATTAc < 1:63631/62‑1 (MQ=255)
aaTATAAGCTAAACGCGATTCGCAACCCATTCAGGTAGCCGGGTTTAACCGGCTGCTATTAc < 1:67648/62‑1 (MQ=255)
atatAAGCTAAACGCGATTCGCAACCCATTCAGGTAGCCGGGTTTAACCGGCTGCTATTAc < 1:12568/61‑1 (MQ=255)
atatAAGCTAAACGCGATTCGCAACCCATTCAGGTAGCCGGGTTTAACCGGCTGCTATTAc < 1:13704/61‑1 (MQ=255)
|
AATATAAGCTAAACGCGATTCGCAACCCATTCAGGTAGCCGGGGTTAACCGGCTGCTATTAC > W3110S.gb/4373273‑4373334
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
