Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,402,255 |
C→T |
I54I (ATC→ATT) |
mutL → |
methyl‑directed mismatch repair protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,402,255 | 0 | C | T | 100.0%
| 186.8
/ NA
| 102 | I54I (ATC→ATT) | mutL | methyl‑directed mismatch repair protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/102); total (0/102) |
Only 100 of 102 total aligned reads displayed.
CGTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTG > W3110S.gb/4402214‑4402275
|
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAATTTATTCGCATTCGTGATAACGGCTg < 1:74877/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:57520/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:6610/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:64762/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:63995/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:61936/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:60136/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:59883/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:58838/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:58002/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:57751/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:57726/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:57551/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:67563/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:57032/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:56291/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:56147/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:53652/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:52595/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:5245/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:51852/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:51619/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:50858/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:10860/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:49112/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:79608/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:9106/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:9088/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:88261/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:88170/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:87507/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:8555/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:85546/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:85319/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:84431/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:81354/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:80351/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:66939/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:79269/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:78274/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:756/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:73720/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:73579/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:73356/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:72262/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:7182/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:70096/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:68836/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:50672/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:18534/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:24485/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:48174/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:22402/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:22317/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:22204/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:21903/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:20658/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:20593/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:20161/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:1980/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:1955/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:23876/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:16410/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:16192/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:15416/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:13886/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:13714/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:13043/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:12804/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:12091/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:11909/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:11266/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:25234/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:47645/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:44956/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:44773/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:44370/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:43293/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:4165/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:40897/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:40503/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:39293/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:36751/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:35913/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:3405/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:32473/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:32286/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:32232/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:29776/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:29206/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:28346/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:27737/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:26008/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:25248/62‑1 (MQ=255)
cgTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:24905/62‑1 (MQ=255)
ttATCGATATTGATATCGAACGCGGTGGTGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:74750/60‑1 (MQ=255)
gTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:74836/61‑1 (MQ=255)
ttGATATCGAACGCGGTGGGGCGAAACTTATTCGCATTCGTGATAACGGCTg < 1:84480/52‑1 (MQ=255)
ggTGGGGCGAAACTTATTAGCATTCGTGATAACGGCTg < 1:1273/38‑1 (MQ=38)
tGGGGCGAAACTTATTCGCTTTCGTGATAACGGCTg < 1:18740/36‑1 (MQ=37)
|
CGTATCGATATTGATATCGAACGCGGTGGGGCGAAACTTATCCGCATTCGTGATAACGGCTG > W3110S.gb/4402214‑4402275
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
