Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
300,837 |
G→A |
S92F (TCC→TTC) |
yagS ← |
predicted oxidoreductase with FAD‑binding domain |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 300,837 | 0 | G | A | 100.0%
| 160.5
/ NA
| 49 | S92F (TCC→TTC) | yagS | predicted oxidoreductase with FAD‑binding domain |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (49/0); total (49/0) |
GGTGGTTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGGAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCA > W3110S.gb/300785‑300897
|
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGaag > 1:1345709/1‑55 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2831410/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2030622/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2165370/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2176175/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2279803/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2365554/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2365657/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2435113/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2576199/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2593282/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2619804/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2621077/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2627293/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2629623/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2674477/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2738817/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:1058772/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:2857515/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:325961/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:340708/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:445800/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:563347/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:567690/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:597894/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:685924/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:713078/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:7496/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:91424/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:982158/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:994555/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:1396264/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:1000501/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:1076389/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:1096613/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:110599/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:1150412/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:1185248/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:1334378/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:1394807/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:1695944/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:1783191/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:1861154/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:1974727/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAcac > 1:1916407/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAca > 1:1062952/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAca > 1:2358324/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAca > 1:249176/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAca > 1:2204752/1‑60 (MQ=255)
ggtggtTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGAAGAGCAca > 1:2730384/1‑60 (MQ=255)
ggAGAGTACCGCGTATTCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:1205970/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGTACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:602496/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:1127127/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:528971/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:565697/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:2196319/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:616670/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:650342/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:1250532/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:1957120/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:729918/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:786520/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:876934/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:2055361/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:952992/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:2043686/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:1619542/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:2294898/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:18302/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:2289011/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:2456097/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:2572133/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:1766273/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:2286167/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:1655252/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:1225399/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:1486083/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:1401085/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:2673581/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:2018634/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:1362184/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:2232993/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:1332451/62‑1 (MQ=255)
ggAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCa < 1:436652/62‑1 (MQ=255)
|
GGTGGTTGCCTGATTACGTAACTGACCAGACGCGCCAGCGAGCAGGGCGCGGGAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCA > W3110S.gb/300785‑300897
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
