Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
406,678 |
C→T |
T9T (ACC→ACT) |
aroM → |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 406,678 | 0 | C | T | 98.6%
| 239.5
/ ‑4.6
| 73 | T9T (ACC→ACT) | aroM | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (72/0); total (73/0) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 |
TGGCGATCCTGACCATCGGCATTGTACCTATGCAGGAAGTTTTGCCGCTCCTGACGGAATACATTGA > W3110S.gb/406665‑406731
|
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2774594/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:368725/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:35738/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2926710/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2923382/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2922057/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2921973/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2913273/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2843449/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:377851/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2655830/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2627192/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2602786/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2593280/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2568869/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2449442/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2449433/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2421890/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:671991/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:986744/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:953219/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:952366/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:776269/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:743071/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:708692/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:693883/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:675442/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2367973/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:591278/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:562479/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:524215/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:497050/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:475655/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:44103/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:417942/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:414234/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1570880/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1861447/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:185702/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:184471/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1818026/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1730996/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1705612/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1701988/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1682729/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1874931/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:156761/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1567410/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1553201/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1459865/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1317199/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1283757/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1208722/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1128346/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2202998/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2360118/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2326087/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2313786/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2245109/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2220829/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2212380/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2209223/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1041058/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2157798/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:21321/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2088457/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:2010052/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1982274/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1931430/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1913360/1‑35 (MQ=255)
tGGCGATCCTGACTATCGGCATTGTACCTATGCAg > 1:1877183/1‑35 (MQ=255)
tGGCGATCATGACTATCGGCATTGTACCTATGCAg > 1:2443917/1‑35 (MQ=25)
cTGACCATCGGCATTGTACCTATGCAGGAAGTTTTGCCGCTCCTGACGGAATACATTGa > 1:1511189/1‑59 (MQ=255)
|
TGGCGATCCTGACCATCGGCATTGTACCTATGCAGGAAGTTTTGCCGCTCCTGACGGAATACATTGA > W3110S.gb/406665‑406731
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
