Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
901,654 |
A→G |
N101N (AAT→AAC) |
artM ← |
arginine transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 901,654 | 0 | A | G | 100.0%
| 187.9
/ NA
| 55 | N101N (AAT→AAC) | artM | arginine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (55/0); total (55/0) |
GCACTATTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAG > W3110S.gb/901649‑901710
|
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGacaaca > 1:1116499/1‑52 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCcaca > 1:1737504/1‑61 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCTACAg > 1:104527/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2548650/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:996913/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2597812/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2620358/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2648037/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2710077/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2724538/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2817024/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2853499/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2857194/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2859849/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:327914/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:376317/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:569023/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:579884/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:593509/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:596883/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:713287/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:815342/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:820706/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:827484/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:86908/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:931095/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:937286/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:1043248/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:1749489/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:106246/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:11133/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:1197495/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:1231433/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:1289487/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:1306599/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:1441549/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:1481903/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:1700593/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:1731753/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2485130/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:175608/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:1768371/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:1944792/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2034932/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2041435/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2064040/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2099691/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2103791/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2177129/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2232295/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2244431/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:2257677/1‑62 (MQ=255)
gcACTGTTCAGCGACAACGCAATCAGCGAACATAACCACGGTTCTGACAACAAATGCCACAg > 1:776355/1‑62 (MQ=255)
gcACTGTTCAACGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:840750/1‑62 (MQ=255)
acACTGTTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAg > 1:59287/2‑62 (MQ=255)
|
GCACTATTCAGCGACAACGCAATCAGCGCACATAACCACGGTTCTGACAACAAATGCCACAG > W3110S.gb/901649‑901710
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
