Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
956,326 |
T→C |
P243P (CCA→CCG) |
ycaO ← |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 956,326 | 0 | T | C | 100.0%
| 100.9
/ NA
| 31 | P243P (CCA→CCG) | ycaO | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/31); total (0/31) |
ACCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATTGGGAAACC > W3110S.gb/956273‑956334
|
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTTATAAGCGAAGATCGGGAAAcc < 1:695296/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:1300230/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:840942/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:639425/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:564047/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:563334/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:487976/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:408985/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:2826972/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:2789299/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:2730760/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:2627144/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:2626448/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:2625285/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:259063/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:2508251/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:2503320/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:2477461/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:2473474/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:2124933/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:210020/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:2025889/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:1881533/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:1846980/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:1731044/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:1591676/62‑1 (MQ=255)
aCCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:1152682/62‑1 (MQ=255)
ccACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:1742071/61‑1 (MQ=255)
ccACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:888654/61‑1 (MQ=255)
aTACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCGGGAAAcc < 1:1888055/45‑1 (MQ=255)
aTACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATCAGGAAAcc < 1:1354006/45‑1 (MQ=38)
|
ACCACGCAAATCACCGGATACTGGCCGCCAAGCGAACCGTCATAAGCGAAGATTGGGAAACC > W3110S.gb/956273‑956334
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
