Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,030,629 |
T→C |
A48A (GCT→GCC) |
yccX → |
predicted acylphosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,030,629 | 0 | T | C | 100.0%
| 131.4
/ NA
| 39 | A48A (GCT→GCC) | yccX | predicted acylphosphatase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/39); total (0/39) |
ACTGGGTTTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCTTGCG > W3110S.gb/1030572‑1030633
|
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2813776/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2343724/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2362141/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2376187/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2453148/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2457185/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2480185/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2534812/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2543124/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2578003/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2161739/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:297411/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:468806/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:542204/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:659056/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:725780/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:751393/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:84603/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:875584/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2152235/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:1152937/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:1159283/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:1363348/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:1473703/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:1517720/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:1552107/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:1585650/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:1905620/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2016205/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2053923/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2130164/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2133533/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:2135281/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:1003779/62‑1 (MQ=255)
aCTGGGACTAACCGGGTACACCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:167299/62‑1 (MQ=255)
aCTGGGACTAACCGGGGACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:185429/62‑1 (MQ=255)
cTGGGACTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:1814548/61‑1 (MQ=255)
gTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:1295707/47‑1 (MQ=255)
ccAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCCTGCg < 1:501615/42‑1 (MQ=255)
|
ACTGGGTTTAACCGGGTACGCCAAAAATCTTGACGATGGCAGCGTGGAAGTGGTTGCTTGCG > W3110S.gb/1030572‑1030633
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
