Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R2
|
164 |
48.3 |
4710601 |
85.3% |
4018142 |
55.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,032,415 |
C→T |
intergenic (‑281/‑146) |
serT ← / → hyaA |
tRNA‑Ser/hydrogenase 1, small subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,032,415 | 0 | C | T | 100.0%
| 244.5
/ NA
| 74 | intergenic (‑281/‑146) | serT/hyaA | tRNA‑Ser/hydrogenase 1, small subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (14/60); total (14/60) |
CACACAGTTTGTATTGTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTCTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTCAGCATCTCACGTGAA > W3110S.gb/1032358‑1032471
|
cacacaGTTTGTATTGTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGc < 1:4334191/62‑1 (MQ=255)
cacacaGTTTGTATTGTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGc < 1:416424/62‑1 (MQ=255)
cacacaGTTTGTATTGTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGc < 1:2075577/62‑1 (MQ=255)
cacacaGTTTGTATTGTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGc < 1:53565/62‑1 (MQ=255)
acaGTTTGTATTGTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGAc < 1:3085245/62‑1 (MQ=255)
acaGTTTGTATTGTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGAc > 1:1219087/1‑62 (MQ=255)
tGTATTGTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTgcgc < 1:243484/62‑1 (MQ=255)
tGTATTGTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTgcgc < 1:237682/62‑1 (MQ=255)
tGTATTGTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTgcgc < 1:2260374/62‑1 (MQ=255)
aTTGTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTGCGCCa < 1:4559321/61‑1 (MQ=255)
ttGTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTGCGCCAGt < 1:2620298/62‑1 (MQ=255)
ttGTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTGCGCCAGt < 1:3168096/62‑1 (MQ=255)
gTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTgc > 1:1049366/1‑54 (MQ=255)
gTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTgc > 1:4493498/1‑54 (MQ=255)
gTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTgc > 1:3721308/1‑54 (MQ=255)
gTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTgc > 1:3587713/1‑54 (MQ=255)
gTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTgc > 1:323603/1‑54 (MQ=255)
gTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTgc > 1:1779218/1‑54 (MQ=255)
gTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTgc > 1:1202495/1‑54 (MQ=255)
gTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTgc > 1:4646733/1‑54 (MQ=255)
ttttGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTGCGCCAGTGc > 1:367584/1‑61 (MQ=255)
ttttGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTGCGCCAGTGc > 1:3154232/1‑61 (MQ=255)
ttttGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTGCGCCAGTGc > 1:2803488/1‑61 (MQ=255)
ttGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTGCGCCAGTGCAg < 1:4531911/61‑1 (MQ=255)
aGTTTCACTACGCTTTATTAACAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGc < 1:2758389/62‑1 (MQ=255)
aCTACGCTTTATTAACAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCg < 1:1591397/61‑1 (MQ=255)
aCTACGCTTTATTAACAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCg < 1:399577/61‑1 (MQ=255)
aCTACGCTTTATTAACAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCg < 1:1748712/61‑1 (MQ=255)
cTACGCTTTATTAACAATACTTTTTGGCGACGTTCGCCAGTGCAGAAGGATGAGCTTTCGtt > 1:294841/1‑62 (MQ=255)
cTACGCTTTATTAACAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGtt > 1:1719278/1‑62 (MQ=255)
cTACGCTTTATTAACAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGt < 1:1164800/61‑1 (MQ=255)
ttaACAATTCTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTCAGCAtc < 1:4529039/61‑1 (MQ=255)
ttaACAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTCAGCAtc < 1:3753084/61‑1 (MQ=255)
ttaACAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTCAGCAtc < 1:2677257/61‑1 (MQ=255)
ttaACAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTCAGCAtc < 1:3481746/61‑1 (MQ=255)
ttaACAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTCAGCAtc < 1:2933348/61‑1 (MQ=255)
ttaACAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTCAGCAtc < 1:201447/61‑1 (MQ=255)
ttaACAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTCAGCAtc < 1:1429705/61‑1 (MQ=255)
taACAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTCAGCAtct < 1:681788/61‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCATAAGGATGAGCttt < 1:2477556/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:1737608/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:150998/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:4378378/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:700535/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:4029688/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:1301894/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:3989565/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:3807701/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:2494642/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:1730389/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:1203260/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:3543952/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:2290625/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:175240/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:2824757/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:2962648/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:3082840/45‑1 (MQ=255)
aCAATACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCttt < 1:2971254/45‑1 (MQ=255)
tACTTTTTGGCGACGTTCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:1355398/48‑1 (MQ=255)
tACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:780009/48‑1 (MQ=255)
tACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:4649006/48‑1 (MQ=255)
tACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:607768/48‑1 (MQ=255)
tACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:4326601/48‑1 (MQ=255)
tACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:431218/48‑1 (MQ=255)
tACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:3264424/48‑1 (MQ=255)
tACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:3039194/48‑1 (MQ=255)
tACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:3001932/48‑1 (MQ=255)
tACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:2494599/48‑1 (MQ=255)
tACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:2034123/48‑1 (MQ=255)
tACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:1600366/48‑1 (MQ=255)
tACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:1429921/48‑1 (MQ=255)
tACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:1324960/48‑1 (MQ=255)
tACTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTc < 1:111680/48‑1 (MQ=255)
aCTTTTTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTCAGCATCTCACGTGaa < 1:1098146/62‑1 (MQ=255)
|
CACACAGTTTGTATTGTTTTGTGCAAAAGTTTCACTACGCTTTATTAACAATACTTTCTGGCGACGTGCGCCAGTGCAGAAGGATGAGCTTTCGTTTTCAGCATCTCACGTGAA > W3110S.gb/1032358‑1032471
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
