Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,320,969 |
T→C |
G177G (GGA→GGG) |
trpC ← |
fused indole‑3‑glycerolphosphate synthetase and N‑(5‑phosphoribosyl)anthranilate isomerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,320,969 | 0 | T | C | 100.0%
| 211.8
/ NA
| 63 | G177G (GGA→GGG) | trpC | fused indole‑3‑glycerolphosphate synthetase and N‑(5‑phosphoribosyl)anthranilate isomerase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/63); total (0/63) |
TGCTCCCAATGCAATGGCGCGCTCCTGTTCCTCTTCATTACTGACTTC > W3110S.gb/1320966‑1321013
|
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2880760/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2424872/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2475583/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:252250/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:253694/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2573864/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2649953/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2671588/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2675152/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2681431/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2685445/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:269141/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2705170/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2728529/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2763223/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2799007/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:241243/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:322830/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:405669/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:464355/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:470937/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:484409/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:486376/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:689764/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:734641/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:762157/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:793946/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:799117/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:873340/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:892437/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:947366/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:963694/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1800356/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1032647/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:105386/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1057132/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1063896/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1065289/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1157537/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1175015/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1196549/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1241628/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1270090/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1323452/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1402808/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1489451/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:163095/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1710082/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:101292/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1914146/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:1930793/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2087606/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2103321/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2121052/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2132089/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2135309/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2247982/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2268871/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2352457/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2387261/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACTGACTTc < 1:2398151/48‑1 (MQ=38)
tGCCCCCAATGCAATGGCGCGCTCCAGTTCCTCTTCATTACCGACTTc < 1:1997561/48‑1 (MQ=37)
tGCCCCCAATGCAATGGCGCGCGCCAGTTCCTCTTCATTACTGACTTc < 1:2004215/48‑1 (MQ=37)
|
TGCTCCCAATGCAATGGCGCGCTCCTGTTCCTCTTCATTACTGACTTC > W3110S.gb/1320966‑1321013
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
