Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,442,561 |
T→G |
intergenic (‑63/‑211) |
ydbK ← / → ydbJ |
fused predicted Fe‑S subunit of pyruvate‑flavodoxin oxidoreductase/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,442,561 | 0 | T | G | 81.4%
| 187.6
/ 24.6
| 70 | intergenic (‑63/‑211) | ydbK/ydbJ | fused predicted Fe‑S subunit of pyruvate‑flavodoxin oxidoreductase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/13); new base G (0/57); total (0/70) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 |
ATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATC > W3110S.gb/1442512‑1442616
|
aTTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTa < 1:1133160/60‑1 (MQ=255)
aTTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTa < 1:2735494/60‑1 (MQ=255)
aTTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTa < 1:2738876/60‑1 (MQ=255)
aTTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTa < 1:2656623/60‑1 (MQ=255)
aTTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTa < 1:2367014/60‑1 (MQ=255)
aTTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTa < 1:1910656/60‑1 (MQ=255)
aTTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTa < 1:396472/60‑1 (MQ=255)
aTTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTa < 1:2061847/60‑1 (MQ=255)
ttGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTa < 1:1718469/59‑1 (MQ=255)
tgctgcGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCtt < 1:622063/62‑1 (MQ=255)
tgctgcGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCtt < 1:28166/62‑1 (MQ=255)
tgctgcGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCtt < 1:1529047/62‑1 (MQ=255)
tgctgcGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCtt < 1:1582185/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCTTTTTCGCTTTTGTGTCCCCCACATc < 1:2345855/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2326377/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2344271/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2223466/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2349124/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2209676/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2208226/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2089824/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2188273/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2718759/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2801044/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2813643/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2855051/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2860849/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2893823/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:314310/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:485059/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:592879/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:655427/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:735610/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:859956/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:902157/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:938524/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1269253/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1362653/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:137999/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1438142/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1454883/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1458336/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1483690/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1496614/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1540752/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1559684/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1596080/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1263994/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1222783/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1756757/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1812033/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1920152/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1933573/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2018035/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2034538/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2040026/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2046043/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2086538/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2095854/62‑1 (MQ=255)
gtaATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGCCCCCCACATc < 1:2802178/62‑1 (MQ=255)
taATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:984859/61‑1 (MQ=255)
taATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1294326/61‑1 (MQ=255)
taATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1339733/61‑1 (MQ=255)
taATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1364806/61‑1 (MQ=255)
taATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:584261/61‑1 (MQ=255)
taATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1487079/61‑1 (MQ=255)
taATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1657679/61‑1 (MQ=255)
taATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:169748/61‑1 (MQ=255)
taATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:2705872/61‑1 (MQ=255)
taATCGTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATc < 1:1031516/61‑1 (MQ=255)
|
ATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATC > W3110S.gb/1442512‑1442616
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
