Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,590,693 |
A→G |
L341L (CTT→CTC) |
ydeT ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,590,693 | 0 | A | G | 100.0%
| 103.3
/ NA
| 31 | L341L (CTT→CTC) | ydeT | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (6/25); total (6/25) |
AGTTTTTATCTTTGCCCCATGAAACCTGTAATTGCCCTGACTGTGGAAGTCCAGTCAGATAAACCTGACCATTTTCCGCGACAATGCTGCCATTTTTAT > W3110S.gb/1590647‑1590745
|
aGTTTTTATCTTTGCCCCATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATaa > 1:2244055/1‑62 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:2547950/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:720986/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:692513/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:65325/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:633922/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:54091/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:479414/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:407072/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:406613/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:343390/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:312605/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:2907529/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:2764420/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:2709808/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:2690682/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:2559163/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:2458575/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:245841/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:2261560/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:2128724/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:2054463/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:1599410/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:1420262/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:1392812/61‑1 (MQ=255)
ccccATGAAACCTGTAATTGCCCTGACTGTGGGAGTCCAGTCAGATAAACCTGACCAtttt < 1:1210925/61‑1 (MQ=255)
tGACTGTGGGAGTCCAGTCAGATAAACCTGACCATTTTCCGCGACAATGCTGCCATTTTTAt > 1:1015169/1‑62 (MQ=255)
tGACTGTGGGAGTCCAGTCAGATAAACCTGACCATTTTCCGCGACAATGCTGCCATTTTTAt > 1:2523416/1‑62 (MQ=255)
tGACTGTGGGAGTCCAGTCAGATAAACCTGACCATTTTCCGCGACAATGCTGCCATTTTTAt > 1:2077582/1‑62 (MQ=255)
tGACTGTGGGAGTCCAGTCAGATAAACCTGACCATTTTCCGCGACAATGCTGCCATTTTTAt > 1:1559663/1‑62 (MQ=255)
tGACTGTGGGAGTCCAGTCAGATAAACCTGACCATTTTCCGCGACAATGCTGCCATTTTTAt > 1:1428269/1‑62 (MQ=255)
|
AGTTTTTATCTTTGCCCCATGAAACCTGTAATTGCCCTGACTGTGGAAGTCCAGTCAGATAAACCTGACCATTTTCCGCGACAATGCTGCCATTTTTAT > W3110S.gb/1590647‑1590745
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
