Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,753,382 |
G→A |
D19D (GAC→GAT) |
ydhW ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,753,382 | 0 | G | A | 100.0%
| 241.6
/ NA
| 74 | D19D (GAC→GAT) | ydhW | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (74/0); total (74/0) |
TCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCGTCAAC > W3110S.gb/1753338‑1753387
|
tCAACTGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1130614/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCGACCATTGCCGCTTCGCCTCATCaat > 1:1455872/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCTCTTCGCCTCATCaag > 1:2658458/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATc > 1:630869/1‑47 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2710048/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:452190/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:322997/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:296888/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2906108/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2831039/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2801580/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2736554/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:548925/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2663991/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:26411/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2584813/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2563588/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2549792/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2356815/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1011165/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:801206/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:986940/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:944552/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:941136/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:939897/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:902344/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:865553/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:865284/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:804987/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:502481/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:793706/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:765053/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:725946/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:676687/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:61197/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2354715/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:545631/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:122771/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1669751/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1605563/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1556853/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1508611/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1406498/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1405885/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1287603/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1264677/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1684446/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1220331/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1207846/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:118906/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1152565/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1105228/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1101459/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1089942/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1081213/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1899417/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2316189/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2289609/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2285010/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2227810/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2180939/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2061542/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1926939/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1901148/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:2329020/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1800728/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1797279/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1762012/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1732753/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaat > 1:1721933/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaa > 1:1858597/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaa > 1:588074/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaa > 1:354807/1‑49 (MQ=255)
tCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCATCaa > 1:2528692/1‑49 (MQ=255)
|
TCAACGGGGTGACGCATCCCCTGCAACCATTGCCGCTTCGCCTCGTCAAC > W3110S.gb/1753338‑1753387
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
