Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,381,618 |
G→A |
A215A (GCC→GCT) |
yfbB ← |
predicted peptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,381,618 | 0 | G | A | 100.0%
| 195.9
/ NA
| 58 | A215A (GCC→GCT) | yfbB | predicted peptidase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (0/58); total (0/58) |
TGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAA‑TTTGCTGTCACGTTCACCACATAA > W3110S.gb/2381589‑2381650
|
ttgCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:721670/60‑1 (MQ=255)
tGGGAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:471252/62‑1 (MQ=255)
tGGCAGTCGTCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1285420/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCTCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2192331/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:503153/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2230080/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2270350/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2277632/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2301291/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2334445/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2361323/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2424441/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2617479/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2797889/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2854189/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2901207/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:292065/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2189640/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:546478/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:576863/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:588574/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:603182/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:637532/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:695035/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:783317/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:829216/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:952398/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:97923/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:991696/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1637411/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1036851/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:112380/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1226190/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1233492/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1371461/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:140281/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1419957/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1423761/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1475440/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1539500/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1590999/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1601135/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1011893/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1679566/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1681615/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1689668/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1714265/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1768000/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1840791/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1869955/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1908751/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2016848/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2066903/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2143147/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2175953/62‑1 (MQ=255)
tGGCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:2181450/62‑1 (MQ=255)
ggCAGTCGGCAGCCAGTTCCGCCGCCAGAGCGCGGAATTTTGCTGTCACGTTCACCACataa < 1:843694/62‑1 (MQ=255)
ggCAGTCGGCAGCCAGTTCCGACGCCAGAGCGCGGAA‑TTTGCTGTCACGTTCACCACataa < 1:1466338/61‑1 (MQ=255)
|
TGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAA‑TTTGCTGTCACGTTCACCACATAA > W3110S.gb/2381589‑2381650
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
