Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,389,320 |
T→C |
N358S (AAC→AGC) |
yfbK ← |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,389,320 | 0 | T | C | 100.0%
| 187.4
/ NA
| 55 | N358S (AAC→AGC) | yfbK | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (34/21); total (34/21) |
TTACCAACATCGGCAATTCGCACCATCATTGCCTCGTTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGTT > W3110S.gb/2389284‑2389377
|
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTc > 1:2677195/1‑51 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:448919/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:2220886/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:2296566/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:2312268/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:2389709/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:2776881/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:2811330/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:324011/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:388983/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:1196171/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:480377/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:745782/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:775466/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:862616/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:879792/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:960242/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:962408/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:972118/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:1598375/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:1009811/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:1242135/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:1274187/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:1469736/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:1556085/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:1593714/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:1621329/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:18727/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:2129450/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:2100273/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaaa > 1:1921341/1‑62 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaa > 1:2181020/1‑61 (MQ=255)
ttACCAACATCGGCAATTCGCACCATCATTGCCTCGCTGTAATTGCTATTCCCCACGCCaa > 1:447148/1‑61 (MQ=255)
ttACCAACATCGGCAATTCGCACAATCATTGCCTCGCTGTAATTGCTATTcc > 1:2459262/1‑52 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:1876692/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:1201030/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:1421729/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:829843/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:816068/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:238030/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:1524071/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:720770/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:719231/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:551611/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:497012/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:2487831/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:158488/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:2391959/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:2827002/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:2825795/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:1612932/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:243710/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:2744994/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:2493537/61‑1 (MQ=255)
tCGCTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGtt < 1:2490275/61‑1 (MQ=255)
|
TTACCAACATCGGCAATTCGCACCATCATTGCCTCGTTGTAATTGCTATTCCCCACGCCAAACGTCGACAGAGTAACACCAGACTCCCGCTGTT > W3110S.gb/2389284‑2389377
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
