Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,918,128 |
A→G |
G425G (GGT→GGC) |
gudX ← |
predicted glucarate dehydratase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,918,128 | 0 | A | G | 81.0%
| 271.0
/ 52.0
| 126 | G425G (GGT→GGC) | gudX | predicted glucarate dehydratase |
| Reads supporting (aligned to +/- strand): ref base A (0/24); new base G (0/102); total (0/126) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.87e-01 |
Only 100 of 126 total aligned reads displayed.
GGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAGGCCTCATG > W3110S.gb/2918081‑2918175
|
ggATGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1113018/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTTCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1194059/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCTGGCCTGCGTCGTTAcg < 1:748607/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGTGCCTGCGTCGTTAcg < 1:629588/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2222725/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2456547/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2426088/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2411458/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2359684/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2358919/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:590910/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:618631/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2302236/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2602273/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2154635/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2147598/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:639412/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2119509/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2084440/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2056598/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2054522/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:340645/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:453634/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:459657/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:420305/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:536158/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:392062/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:389331/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:545658/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:377932/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:346962/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2469220/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2888953/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:565764/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2828111/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2822961/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2771805/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:587601/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2679051/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:660305/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:86786/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1602002/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1592506/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:156474/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:802733/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:836284/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:857213/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1449604/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1413566/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:778507/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1355714/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1282969/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1245157/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:112812/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1107940/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1090454/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:942220/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1026648/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1668938/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1992261/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:668068/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:194797/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:685481/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1929046/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1920563/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1915424/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:188714/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1885130/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1870788/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:740230/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1791082/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1767729/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1747930/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1671395/62‑1 (MQ=255)
ggACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2030759/62‑1 (MQ=255)
gaaCGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:99142/60‑1 (MQ=255)
gACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:446228/61‑1 (MQ=255)
gACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1001226/61‑1 (MQ=255)
gACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:1459447/61‑1 (MQ=255)
gACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2763861/61‑1 (MQ=255)
gACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGGCCTGCGTCGTTAcg < 1:2144121/61‑1 (MQ=255)
tACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTAc < 1:409648/54‑1 (MQ=255)
tACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTAc < 1:1540755/54‑1 (MQ=255)
tACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTAc < 1:170616/54‑1 (MQ=255)
tACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTAc < 1:537914/54‑1 (MQ=255)
cAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGc < 1:2355804/62‑1 (MQ=255)
cAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGc < 1:2258856/62‑1 (MQ=255)
cAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGc < 1:2357672/62‑1 (MQ=255)
cAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGc < 1:2009636/62‑1 (MQ=255)
cAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGc < 1:193087/62‑1 (MQ=255)
cAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGc < 1:1839357/62‑1 (MQ=255)
cAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGc < 1:753106/62‑1 (MQ=255)
cAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGc < 1:1475162/62‑1 (MQ=255)
cAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGc < 1:1063062/62‑1 (MQ=255)
aaaGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGc < 1:1954498/61‑1 (MQ=255)
aGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAGGCCTCAtg < 1:570328/62‑1 (MQ=255)
aGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAGGCCTCAtg < 1:1652643/62‑1 (MQ=255)
aGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAGGCCTCAtg < 1:2838993/62‑1 (MQ=255)
aGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAGGCCTCAtg < 1:1375612/62‑1 (MQ=255)
tACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAGGCCTCAtg < 1:383888/59‑1 (MQ=255)
|
GGACGTTTACGGTCAAAGGTCCAGCCGGGGATCAGGTACTGCATCGGACCTGCGTCGTTACGCGCACCGCCAGGCAGACGTTTATAGGCCTCATG > W3110S.gb/2918081‑2918175
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
