Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,348,217 |
C→T |
intergenic (+124/‑90) |
npr → / → yrbL |
phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr)/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,348,217 | 0 | C | T | 100.0%
| 234.8
/ NA
| 70 | intergenic (+124/‑90) | npr/yrbL | phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr)/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (39/31); total (39/31) |
ATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGTT > W3110S.gb/3348160‑3348254
|
aTCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTa < 1:2748151/61‑1 (MQ=255)
aTCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTa < 1:1194184/61‑1 (MQ=255)
aTCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTa < 1:750398/61‑1 (MQ=255)
tCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTa < 1:1538706/60‑1 (MQ=255)
gacATTTGTACATTTTGTGCGCTTATCACTTTCAGAAGAACTTTAAGaa > 1:2705201/3‑49 (MQ=255)
gTCATTTTTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:2489451/1‑49 (MQ=255)
gTCATTTGTTCATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:754017/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:2771670/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:2869046/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:2716320/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:267455/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:2650147/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:2615926/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:2483255/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:2338319/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:2200613/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:2087428/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:2849313/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:111060/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:2880242/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:368133/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:438507/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:452813/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:491494/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:515707/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:772575/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:915836/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:930296/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:975019/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:1256871/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:143549/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:1452881/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:1640512/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:1677996/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:1272931/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:1267461/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:185917/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:1217237/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:1190095/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:1166340/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:1152536/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGaa > 1:2085183/1‑49 (MQ=255)
gTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACTTTAAGa > 1:1561300/1‑48 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:729171/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:678913/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:550189/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:1079091/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:49238/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:1229934/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:482688/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:974787/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:1315917/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:2409044/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:2035100/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:2208231/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:2214755/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:2225618/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:2003363/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:239540/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:2401282/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:406908/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:199243/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:1930134/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:2611856/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:1901177/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:1821649/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:1735816/61‑1 (MQ=255)
gcgcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGtt < 1:1705935/61‑1 (MQ=255)
gcTTTTCACTTTCAGAAGAACTTTAAGAAAACCTTAAGAGGCATTTTTTAGGTTTTGtt < 1:1451787/59‑1 (MQ=255)
gaagaaCTTTAAGAAAACCTTAAGAGGCATTGTTTAGGGTTTGtt < 1:886112/45‑1 (MQ=38)
|
ATCGTTCTCAATCAACGTCATTTGTACATTTTGTGCGCTTTTCACTTTCAGAAGAACCTTAAGAAAACCTTAAGAGGCATTGTTTAGGTTTTGTT > W3110S.gb/3348160‑3348254
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
