Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,582,332 |
G→A |
P310P (CCG→CCA) |
glnG → |
fused DNA‑binding response regulator in two‑component regulatory system with GlnL, nitrogen regulator I (NRI) |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,582,332 | 0 | G | A | 100.0%
| 197.3
/ NA
| 61 | P310P (CCG→CCA) | glnG | fused DNA‑binding response regulator in two‑component regulatory system with GlnL, nitrogen regulator I (NRI) |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (61/0); total (61/0) |
CCGTGAGGATCTGTTCCACCGCCTGAACGTTATCCGCGTTCATCTGCCGCCGCTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTACAGGTTGCC > W3110S.gb/3582281‑3582389
|
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTg > 1:1288951/1‑55 (MQ=38)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGaa > 1:1153637/1‑61 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGaa > 1:961955/1‑61 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGaa > 1:288759/1‑61 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2741564/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:462462/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:342371/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:319759/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2899396/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2846686/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2817466/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:280332/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2797734/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:490566/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:265395/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2557661/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2479838/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2453987/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2432794/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:488198/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2451261/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:514010/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:653492/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:720621/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:748332/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:809319/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:815103/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:821219/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:858944/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:890607/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:903853/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:959694/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:975482/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:976036/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1670763/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1088665/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1174711/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1174896/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1206203/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1239763/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1317682/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1387103/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1407405/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1485425/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1507065/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1554520/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1558966/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1654479/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1690019/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1746101/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2270161/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2222200/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2218958/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1797701/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1814558/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:1834188/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2035052/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2032180/1‑62 (MQ=255)
ccGTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTAATCTGCCGCCACTGCGCGAAc > 1:1794314/1‑62 (MQ=38)
ccGTGAGGATCTGTTCCACAGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:2410989/1‑62 (MQ=38)
ccGTGAGGATCAGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCACTGCGCGAAc > 1:663837/1‑62 (MQ=38)
gccgcTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTTCAGGTTGcc < 1:485358/61‑1 (MQ=255)
gccgcTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTACAGGTTGcc < 1:1454298/61‑1 (MQ=255)
gccgcTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTACAGGTTGcc < 1:1077047/61‑1 (MQ=255)
gccgcTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTACAGGTTGcc < 1:1252625/61‑1 (MQ=255)
gccgcTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTACAGGTTGcc < 1:209808/61‑1 (MQ=255)
gccgcTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTACAGGTTGcc < 1:1417139/61‑1 (MQ=255)
gccgcTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTACAGGTTGcc < 1:756585/61‑1 (MQ=255)
gccgcTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTACAGGTTGcc < 1:1784196/61‑1 (MQ=255)
gccgcTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTACAGGTTGcc < 1:1787687/61‑1 (MQ=255)
gccgcTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTACAGGTTGcc < 1:2355889/61‑1 (MQ=255)
gccgcTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTACAGGTTGcc < 1:374878/61‑1 (MQ=255)
gccgcTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTACAGGTTGcc < 1:358156/61‑1 (MQ=255)
gccgcTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTACAGGTTGcc < 1:288820/61‑1 (MQ=255)
|
CCGTGAGGATCTGTTCCACCGCCTGAACGTTATCCGCGTTCATCTGCCGCCGCTGCGCGAACGTCGGGAAGATATTCCCCGTCTGGCGCGCCATTTTTTACAGGTTGCC > W3110S.gb/3582281‑3582389
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
