Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,687,566 |
C→T |
P295S (CCA→TCA) |
yifB → |
predicted bifunctional protein, enzyme and transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,687,566 | 0 | C | T | 100.0%
| 77.4
/ NA
| 24 | P295S (CCA→TCA) | yifB | predicted bifunctional protein, enzyme and transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (24/0); total (24/0) |
GCGATGGTAGGCGGTGGCGCAATTCCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGT > W3110S.gb/3687542‑3687603
|
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCg > 1:650774/1‑61 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCg > 1:1414271/1‑61 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:2393870/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:982741/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:976445/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:951095/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:612258/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:455100/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:283843/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:2766755/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:2735262/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:2683985/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:2398196/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:1019921/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:2088091/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:2068237/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:1776764/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:1734966/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:1547651/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:1256161/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:1188798/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:1188380/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:107032/1‑62 (MQ=255)
gCGATGGTAGGCGGTGGCGCAATTTCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGt > 1:1057897/1‑62 (MQ=255)
|
GCGATGGTAGGCGGTGGCGCAATTCCAGGGCCCGGTGAAATTTCGCTGGCGCATAACGGCGT > W3110S.gb/3687542‑3687603
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
