Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,763,473 |
T→C |
I3I (ATT→ATC) |
yidA → |
predicted hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,763,473 | 0 | T | C | 100.0%
| 346.3
/ NA
| 100 | I3I (ATT→ATC) | yidA | predicted hydrolase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/100); total (0/100) |
CCAATCTACCTGGGGAACTCATGGCTATTAAACTC > W3110S.gb/3763445‑3763479
|
ccAATCTTCCTGGGGAACTCATGGCTATCAAACTc < 1:959587/35‑1 (MQ=37)
ccAATCTGCCTGGGGAACTCATGGCTATCAAACTc < 1:2330643/35‑1 (MQ=37)
ccAATCTACCTGGGGGACTCATGGCTATCAAACTc < 1:2773746/35‑1 (MQ=37)
ccAATCTACCTGGGGATCTCATGGCTATCAAACTc < 1:1588041/35‑1 (MQ=37)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2685139/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2873216/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2839143/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2837551/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2835518/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2777826/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2768082/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2761140/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:275615/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2728792/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2706263/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2686533/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2875982/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2677449/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2637798/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2634554/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2616103/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2609057/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2606335/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2545618/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2508170/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2455267/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2439625/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:521773/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:974482/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:911993/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:886595/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:87752/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:809726/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:748067/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:722909/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:674113/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:639339/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:63438/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:604373/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2873949/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:515189/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:49516/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:475123/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:433797/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:41037/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:368842/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:34619/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:310645/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2914091/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2902614/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2401973/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1228392/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1724326/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1697711/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1683206/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1681454/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1605815/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:160381/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1584758/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1474725/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1403630/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1352149/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1351858/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1315829/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:181675/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1196441/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1147093/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1146690/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1128732/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1085505/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1084976/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1039442/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:103688/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:102882/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1023376/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1020435/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2110419/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1017602/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2396728/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2395547/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2393544/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2321381/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2301828/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:22221/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2219691/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:218508/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2177601/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:2164206/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:242097/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:208880/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1971410/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1961645/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1954600/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1940950/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1928394/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1921259/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1899335/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1873682/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1864140/35‑1 (MQ=255)
ccAATCTACCTGGGGAACTCATGGCTATCAAACTc < 1:1859077/35‑1 (MQ=255)
|
CCAATCTACCTGGGGAACTCATGGCTATTAAACTC > W3110S.gb/3763445‑3763479
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
