Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,013,511 |
C→T |
A878V (GCG→GTG) |
rbbA → |
fused ribosome‑associated ATPases |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,013,511 | 0 | C | T | 100.0%
| 170.2
/ NA
| 52 | A878V (GCG→GTG) | rbbA | fused ribosome‑associated ATPases |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (24/28); total (24/28) |
CTGACTATCGCCCGCGGGACGTTCTCGAAAGCGCTGGATCTGACTGATTTGTGGCAACTTTTTATCC > W3110S.gb/4013480‑4013546
|
ctaaCTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:1892043/4‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGa > 1:2225270/1‑38 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:917871/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:1011440/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:520701/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:466336/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:2831872/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:2580375/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:250705/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:2441305/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:2376393/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:222991/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:2202908/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:2188184/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:1968145/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:1195251/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:1740364/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:1799710/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:1403698/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:1279299/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:1223833/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACtttt > 1:1219007/1‑62 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACttt > 1:2363065/1‑61 (MQ=255)
cTGACTATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTCATTTGTGGCAACttt > 1:2555272/1‑61 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGAGTGATTTGTGGCAACTTTTTATcc < 1:2604454/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:587770/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:583070/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:634989/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:694757/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:809523/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:2609906/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:83411/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:895750/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:905103/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:2585028/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:1397064/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:1349296/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:1381952/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:2371688/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:2330996/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:22780/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:1507356/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:1563940/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:2212371/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:2204734/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:1638819/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:1654722/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:2146437/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:1719730/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:1904413/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:1898816/62‑1 (MQ=255)
tATCGCCCGCGGGACGTTCTCGAAAGTGCTGGATCTGACTGATTTGTGGCAACTTTTTATcc < 1:1830895/62‑1 (MQ=255)
|
CTGACTATCGCCCGCGGGACGTTCTCGAAAGCGCTGGATCTGACTGATTTGTGGCAACTTTTTATCC > W3110S.gb/4013480‑4013546
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
