Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,332,927 |
T→C |
L371L (CTT→CTC) |
yjdA → |
conserved hypothetical protein with nucleoside triphosphate hydrolase domain |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,332,927 | 0 | T | C | 100.0%
| 85.9
/ NA
| 26 | L371L (CTT→CTC) | yjdA | conserved hypothetical protein with nucleoside triphosphate hydrolase domain |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (26/0); total (26/0) |
CCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGA > W3110S.gb/4332914‑4332950
|
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCg > 1:2189190/1‑36 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCg > 1:1011507/1‑36 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:2463065/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:987471/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:904168/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:837726/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:770407/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:510086/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:447081/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:375254/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:2912706/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:2906386/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:277328/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:268487/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:2611879/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:2432385/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:2419583/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:1971726/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:1925553/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:188329/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:180526/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:1636123/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:1510217/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:1321718/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:1091838/1‑37 (MQ=255)
cccATGCCGCGCTCGGCAGGCGCTGGCGTCATGCCGa > 1:1042439/1‑37 (MQ=255)
|
CCCATGCCGCGCTTGGCAGGCGCTGGCGTCATGCCGA > W3110S.gb/4332914‑4332950
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
