Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,381,437 |
A→C |
intergenic (+56/‑120) |
ecnB → / → sugE |
entericidin B membrane lipoprotein/multidrug efflux system protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,381,437 | 0 | A | C | 100.0%
| 24.9
/ NA
| 9 | intergenic (+56/‑120) | ecnB/sugE | entericidin B membrane lipoprotein/multidrug efflux system protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (9/0); total (9/0) |
CTGTGTCGTGCCGTTTGTTTTTTCTGCGATAGTCACAAAGGTAATAGTTGAAATTCCCCTGC > W3110S.gb/4381400‑4381461
|
cTGTGTCGTGCCGTTTGTTTTTTCTGCGATAGTCACACAGGTAATAGTTGAAATTCCCCTGc > 1:1327251/1‑62 (MQ=255)
cTGTGTCGTGCCGTTTGTTTTTTCTGCGATAGTCACACAGGTAATAGTTGAAATTCCCCTGc > 1:1371186/1‑62 (MQ=255)
cTGTGTCGTGCCGTTTGTTTTTTCTGCGATAGTCACACAGGTAATAGTTGAAATTCCCCTGc > 1:1460452/1‑62 (MQ=255)
cTGTGTCGTGCCGTTTGTTTTTTCTGCGATAGTCACACAGGTAATAGTTGAAATTCCCCTGc > 1:1531019/1‑62 (MQ=255)
cTGTGTCGTGCCGTTTGTTTTTTCTGCGATAGTCACACAGGTAATAGTTGAAATTCCCCTGc > 1:1536872/1‑62 (MQ=255)
cTGTGTCGTGCCGTTTGTTTTTTCTGCGATAGTCACACAGGTAATAGTTGAAATTCCCCTGc > 1:1733584/1‑62 (MQ=255)
cTGTGTCGTGCCGTTTGTTTTTTCTGCGATAGTCACACAGGTAATAGTTGAAATTCCCCTGc > 1:2013750/1‑62 (MQ=255)
cTGTGTCGTGCCGTTTGTTTTTTCTGCGATAGTCACACAGGTAATAGTTGAAATTCCCCTGc > 1:2118224/1‑62 (MQ=255)
cTGTGTCGTGCCGTTTGTTTTTTCTGCGATAGTCACACAGGTAATAGTTGAAATTCCCCTGc > 1:669282/1‑62 (MQ=255)
|
CTGTGTCGTGCCGTTTGTTTTTTCTGCGATAGTCACAAAGGTAATAGTTGAAATTCCCCTGC > W3110S.gb/4381400‑4381461
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
