Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,521,314 |
T→C |
T16A (ACC→GCC) |
fecA ← |
ferric citrate outer membrane transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,521,314 | 0 | T | C | 100.0%
| 149.5
/ NA
| 44 | T16A (ACC→GCC) | fecA | ferric citrate outer membrane transporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (44/0); total (44/0) |
CGGCAGCAGGCTCAGGCGAATGGTGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACG > W3110S.gb/4521291‑4521352
|
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGgtg > 1:372824/1‑38 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGa > 1:2769725/1‑49 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAAc > 1:931896/1‑61 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAAc > 1:2761052/1‑61 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:2652123/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:2557673/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:2777749/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:2792854/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:2847958/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:290210/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:387282/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:392298/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:528177/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:602811/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:692226/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:797532/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:82769/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:863484/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:892524/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:895987/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:897212/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:923285/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:1799278/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:1132135/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:1175027/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:1203934/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:1396121/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:1471493/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:1479077/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:1505314/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:1607512/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:1622707/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:169501/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:1039212/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:1810187/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:1829275/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:2058770/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:2064281/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:2129264/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:2138301/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:2142954/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:220945/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:2465923/1‑62 (MQ=255)
cGGCAGCAGGCTCAGGCGAATGGCGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACg > 1:2554071/1‑62 (MQ=255)
|
CGGCAGCAGGCTCAGGCGAATGGTGTTAACCAAAGGTGTTGTTTTACGAAAAACGCGTAACG > W3110S.gb/4521291‑4521352
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
