Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I2 R1
|
52 |
300.6 |
3297834 |
97.8% |
3225281 |
57.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
462,043 |
G→A |
R10H (CGC→CAC) |
sdhD → |
succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 462,043 | 0 | G | A | 100.0%
| 499.0
/ NA
| 143 | R10H (CGC→CAC) | sdhD | succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (72/71); total (72/71) |
Only 100 of 144 total aligned reads displayed.
CACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTC > minE/461993‑462098
|
cACTTCTCGCAGGAGTCCTCGTATGTTAAGCAACGCCTCCGCATTAGGACACAATGGCGTa > 1:2160825/1‑61 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGAcaca > 1:210533/1‑53 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGt > 1:1148835/1‑60 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGt > 1:2463693/1‑60 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTa > 1:726797/1‑61 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTa > 1:654820/1‑61 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTa > 1:644900/1‑61 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTa > 1:15047/1‑61 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTa > 1:3282901/1‑61 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2787882/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:3063121/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2713085/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2636968/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2615302/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2535153/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2403069/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2386501/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2282841/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2242364/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2162526/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2876372/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2965058/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2998513/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:1028875/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:3163632/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:3205208/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:343064/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:457927/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:586808/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:605429/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:609747/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:623115/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:713535/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:876947/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2062475/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2083589/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:1622493/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:1679071/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:1711727/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:1266091/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:1202048/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:1802462/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:1195211/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:1818165/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2058597/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:1042818/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:1003612/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:190133/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:1943862/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCACCGCATTAGGACACAATGGCGTAc > 1:454057/1‑62 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGACTCCGCATTAGGACACAATGGCGTAc > 1:451415/1‑62 (MQ=255)
cACTTATCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACACAATGGCGTAc > 1:2367110/1‑62 (MQ=255)
cAACGCCTCCGCATTAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTa < 1:1333698/62‑1 (MQ=255)
cAACGCCTCCGCATTAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTa < 1:623670/62‑1 (MQ=255)
tAGGACACAATTGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:2360435/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:962125/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:1295634/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:420595/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:419027/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:3025352/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:357148/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:3260841/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:1479546/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:447054/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:45118/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:565330/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:919078/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:1187217/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:1087818/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:625128/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:1151436/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:1121298/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:1485368/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:2111595/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:2184348/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:1843584/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:2317757/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:2326320/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:236240/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:1826427/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:2396090/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:1813531/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:2484422/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:2485379/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:2562619/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:1727658/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:2676731/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:2685966/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:1684530/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:2853451/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:1628139/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:2929939/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:1525164/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:302487/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:151686/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:3121572/62‑1 (MQ=255)
tAGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:3201811/62‑1 (MQ=255)
tAGGACACAATCGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:131728/62‑1 (MQ=255)
tAGCACACAATCGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:3273197/62‑1 (MQ=255)
aGGACACAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGctc < 1:968266/61‑1 (MQ=255)
|
CACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTC > minE/461993‑462098
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
