Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I2 R1
|
52 |
300.6 |
3297834 |
97.8% |
3225281 |
57.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,356,349 |
G→A |
P66S (CCG→TCG) |
yihD ← |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,356,349 | 0 | G | A | 100.0%
| 1041.0
/ NA
| 301 | P66S (CCG→TCG) | yihD | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (191/110); total (191/110) |
Only 100 of 301 total aligned reads displayed.
ATAATCTTTCTGCAAACCCGGGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATCAG > minE/2356329‑2356397
|
aTAATCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAAt > 1:1492368/1‑44 (MQ=255)
aTAATCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGt > 1:513054/1‑59 (MQ=255)
aTAATCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGt > 1:1106591/1‑59 (MQ=255)
aTAATCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGt > 1:3230548/1‑59 (MQ=255)
aTAATCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGt > 1:2547044/1‑59 (MQ=255)
aTAATCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGt > 1:2618896/1‑59 (MQ=255)
aTAATCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGt > 1:392651/1‑59 (MQ=255)
aTAATCTT‑‑TGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGt > 1:2756911/1‑57 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:247756/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:2528522/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:1834421/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:333229/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:1921657/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:55419/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:436876/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:2180633/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:2003927/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:2050287/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:2069693/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:2132017/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:713519/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:969423/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:904930/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:820920/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:2631091/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:1180241/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:882743/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:1212279/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:1349496/56‑1 (MQ=255)
aaTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:1279739/56‑1 (MQ=255)
aTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:285772/55‑1 (MQ=255)
aTCTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAgg < 1:1369043/55‑1 (MQ=255)
aTCTTTATGCTAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTGAgg < 1:2444878/55‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:3152647/62‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:2324619/62‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:3209649/62‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:309638/62‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:1013089/62‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:527238/62‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:859632/62‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:1952181/62‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:1393902/62‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:576466/62‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:1423998/62‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:632720/62‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:657735/62‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:1688857/62‑1 (MQ=255)
cTTTCTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATc < 1:1470881/62‑1 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCCCGCATTTTCAGGTGATAGa > 1:741696/1‑56 (MQ=39)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCAtttt > 1:684003/1‑45 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCGGGTGATAGa > 1:84715/1‑56 (MQ=39)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAgt > 1:2203881/1‑55 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:3183005/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:588942/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:56845/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:311111/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:486777/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:937919/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:3052388/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:983038/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:2972257/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:1976205/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:1050879/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:1134492/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:1306321/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:1534351/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:1601222/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:1630288/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:1644306/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:1805662/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:1848556/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:191294/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:2230421/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:289085/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:2399885/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:2774137/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGa > 1:2288458/1‑56 (MQ=255)
cTGCAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGAAAGa > 1:186364/1‑56 (MQ=39)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGAt > 1:3006490/1‑50 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:1702636/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:2944779/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:1075409/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:1130143/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:1205942/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:144877/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:2816322/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:779040/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:2710308/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:696776/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:2693430/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:2470912/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:2393516/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:1927323/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:2915458/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:2110632/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:3277711/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:464017/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:224627/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:2278692/1‑52 (MQ=255)
cAAACCCGAGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAg > 1:359116/1‑52 (MQ=255)
|
ATAATCTTTCTGCAAACCCGGGATCACCGCATCTTTCGCGGAATCACGCATTTTCAGGTGATAGATCAG > minE/2356329‑2356397
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
