Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I2 R1
|
52 |
300.6 |
3297834 |
97.8% |
3225281 |
57.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,518,129 |
C→T |
V316M (GTG→ATG) |
spoT ← |
bifunctional (p)ppGpp synthetase II and guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,518,129 | 0 | C | T | 100.0%
| 411.0
/ NA
| 118 | V316M (GTG→ATG) | spoT | bifunctional (p)ppGpp synthetase II and guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (85/33); total (85/33) |
Only 100 of 118 total aligned reads displayed.
ACACCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCACACCGTGCGGGCCGATCATCGAGGTGTGCA > minE/2518071‑2518158
|
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:3131417/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:1921638/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:1953780/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:2067247/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:2201762/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:2235146/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:2332569/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:2541662/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:2590319/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:2671066/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:2845834/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:1080549/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:351099/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:480435/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:508917/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:628516/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:65649/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:675750/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:787402/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:788952/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:792498/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:947645/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:1383372/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:1773300/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:1248644/62‑1 (MQ=255)
acacCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:1768311/62‑1 (MQ=255)
cATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:3136560/57‑1 (MQ=255)
gTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAgg > 1:2262365/1‑62 (MQ=255)
tCTTCGGTACGGATCTGGACCTCAACCGGCATAcc < 1:2455253/35‑1 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACGGTGCGGGCCGATCATCGAGGTGTGCa > 1:535757/1‑54 (MQ=39)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATTATCGAGGTGTGCa > 1:2008902/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAgg > 1:3243597/1‑48 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGc > 1:1639844/1‑53 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1310392/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:55986/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:547982/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:512969/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:3165335/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1314252/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:3235029/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:500403/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1364079/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:431701/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:136713/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:3278566/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:3274835/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:3270929/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1158688/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:948366/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1036089/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:931468/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:928111/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:917102/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:821341/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1127929/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1154935/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:572085/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:781821/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:736994/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1164919/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:655671/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:652632/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:3063486/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:599608/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:573235/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2100167/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2387932/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2334198/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1548632/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2238887/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1669356/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:218675/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2176846/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2124011/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2429792/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1692190/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2057861/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2028215/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1986949/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1943369/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1891055/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1856243/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1854201/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2506459/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1831362/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:3040395/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:3016594/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:3002877/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2976363/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2958237/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2911256/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1423863/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2818281/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2785645/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:2683118/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1492439/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1537241/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:1537421/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCGGGCCGATCATCGAGGTGTGCa > 1:3119691/1‑54 (MQ=255)
tACGGATCTGGACCTCAACCGGCATACCGTGCAGGCCGATCATCGAGGTGTGCa > 1:3099899/1‑54 (MQ=38)
|
ACACCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCACACCGTGCGGGCCGATCATCGAGGTGTGCA > minE/2518071‑2518158
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
