Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F28 I3 R1 26 437.0 1038814 65.5% 680423 57.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA minE 1,764,743 Δ1 bp coding (2117/2574 nt) clpB ← protein disaggregation chaperone

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,764,7430G.100.0% 125.1 / NA 29coding (2117/2574 nt)clpBprotein disaggregation chaperone
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (0/29);  total (0/29)

AAGTCGACCGTTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATG  >  minE/1764734‑1764796
         |                                                     
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:133508/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:945958/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:870468/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:862120/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:855622/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:755427/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:671103/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:665/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:655664/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:641699/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:626012/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:558520/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:27468/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:120563/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:134157/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:173612/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:177090/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:192060/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:443928/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:312158/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:336708/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:401497/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:413481/62‑1 (MQ=255)
aaGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:428360/62‑1 (MQ=255)
aaGGCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:81110/62‑1 (MQ=255)
 aGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:540900/61‑1 (MQ=255)
 aGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:888709/61‑1 (MQ=255)
 aGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:916349/61‑1 (MQ=255)
 aGTCGACC‑TTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATg  <  1:474644/61‑1 (MQ=255)
         |                                                     
AAGTCGACCGTTCTCCCTTGCCCGTCAGTCAGACGCCCATCATCCAGTACCTGCAACAGAATG  >  minE/1764734‑1764796

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A