Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I3 R1
|
26 |
437.0 |
1038814 |
65.5% |
680423 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,442,451 |
A→G |
F278L (TTC→CTC) |
ilvA ← |
threonine deaminase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,442,451 | 0 | A | G | 100.0%
| 261.5
/ NA
| 67 | F278L (TTC→CTC) | ilvA | threonine deaminase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (0/67); total (0/67) |
GCGCCAGCGCGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAATAAATCCTTCATCGCCG > minE/2442406‑2442468
|
gcgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGT‑AATCCTTCATcgccg < 1:792601/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGTGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:534091/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGGGTAAATCCTTCATcgccg < 1:790884/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:618444/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:718000/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:705012/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:695033/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:681952/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:665634/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:653052/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:644767/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:622977/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:727819/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:615365/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:593097/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:586131/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:584389/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:583050/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:72214/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:571404/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:749172/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:757361/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:757877/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:77557/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:779779/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:787917/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:788701/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:788715/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:797527/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:839274/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:90896/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:91345/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:95476/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:259145/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:11832/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:130479/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:138641/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:138666/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:1472/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:149204/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:154630/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:158830/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:178853/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:184564/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:192919/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:207463/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:209975/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:226370/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:1000634/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:431495/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:569262/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:558825/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:539698/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:533956/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:505063/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:4817/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:447139/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:263382/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:426788/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:418789/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:402882/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:375658/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:341369/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:30231/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:28930/62‑1 (MQ=255)
cgccagcgcGCCAGAGGGTTCCACCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:822027/62‑1 (MQ=255)
gcgcCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAGTAAATCCTTCATcgccg < 1:780661/55‑1 (MQ=255)
|
GCGCCAGCGCGCCAGAGGGTTCCGCCACCGCGCGCACATCTTCGAATAAATCCTTCATCGCCG > minE/2442406‑2442468
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
