Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I3 R1
|
26 |
437.0 |
1038814 |
65.5% |
680423 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,549,665 |
G→A |
G248R (GGG→AGG) |
kbl → |
glycine C‑acetyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,549,665 | 0 | G | A | 100.0%
| 54.6
/ NA
| 17 | G248R (GGG→AGG) | kbl | glycine C‑acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (17/0); total (17/0) |
GATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCGGGGCTTCTGGTGGTTATACCGCGGC > minE/2549629‑2549690
|
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:174386/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:890090/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:84102/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:837551/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:787514/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:784659/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:695955/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:684505/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:584208/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:388480/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:36221/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:263501/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:196747/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:195513/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:190570/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcggc > 1:168343/1‑62 (MQ=255)
gATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCAGGGCTTCTGGTGGTTATACCgcgg > 1:903138/1‑61 (MQ=255)
|
GATATTATCACCGGTACGCTTGGTAAAGCGCTGGGCGGGGCTTCTGGTGGTTATACCGCGGC > minE/2549629‑2549690
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
