Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R2
|
164 |
48.3 |
4710601 |
85.3% |
4018142 |
55.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,055,413 |
A→G |
D396D (GAT→GAC) |
torS ← |
hybrid sensory histidine kinase in two‑component regulatory system with TorR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,055,413 | 0 | A | G | 100.0%
| 147.7
/ NA
| 40 | D396D (GAT→GAC) | torS | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (31/9); total (31/9) |
GGTGGCGATTCAGTGCATGAACATTGCTGCGAAACGCATCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTCCGGGAAAG > W3110S.gb/1055376‑1055468
|
ggTGGCGATTCAGTGCATGAACATTGCTGCGAAACGCGTCCATCAGCCGCCCGATGGTATc > 1:2125666/1‑61 (MQ=255)
gCATGAACATTGCTGCGAAACGCGTCCATCAGCCCCCCGATGGTATCCAGCTCCCGTACGcc < 1:2856481/62‑1 (MQ=255)
gCATGAACATTGCTGCGAAACGCGTCCATCAGCCCCCCGATGGTATCCAGCTCCCGTACGcc < 1:2781746/62‑1 (MQ=255)
aTTGCTGCGAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGttt > 1:3986273/1‑62 (MQ=255)
aTTGCTGCGAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGttt > 1:2281073/1‑62 (MQ=255)
ttGCTGCGAAACGCGTCCATCAGCCGCCCGATGGTATCCa < 1:4521790/40‑1 (MQ=255)
ttGCTGCGAAACGCGTCCATCAGCCGCCCGATGGTATCCa < 1:3415034/40‑1 (MQ=255)
ttGCTGCGAAACGCGTCCATCAGCCGCCCGATGGTATCCa < 1:358474/40‑1 (MQ=255)
ttGCTGCGAAACGCGTCCATCAGCCGCCCGATGGTATCCa < 1:2687592/40‑1 (MQ=255)
ttGCTGCGAAACGCGTCCATCAGCCGCCCGATGGTATCCa < 1:2664353/40‑1 (MQ=255)
ttGCTGCGAAACGCGTCCATCAGCCGCCCGATGGTATCCa < 1:503524/40‑1 (MQ=255)
tgctgcGAAACGCGTCCATCAGCCGCCCGATGGTATCCa < 1:686623/39‑1 (MQ=255)
tgctgcGAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTcc > 1:4521996/1‑62 (MQ=255)
tgctgcGAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTcc > 1:2266661/1‑62 (MQ=255)
tgctgcGAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTcc > 1:4174700/1‑62 (MQ=255)
tgctgcGAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTcc > 1:953614/1‑62 (MQ=255)
tgctgcGAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTcc > 1:3881920/1‑62 (MQ=255)
tgctgcGAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTcc > 1:1035496/1‑62 (MQ=255)
tgctgcGAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTca > 1:1855823/1‑61 (MQ=255)
gAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCg > 1:1092156/1‑40 (MQ=255)
gAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCg > 1:4376279/1‑40 (MQ=255)
gAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCg > 1:721091/1‑40 (MQ=255)
gAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCg > 1:3546293/1‑40 (MQ=255)
gAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCg > 1:189919/1‑40 (MQ=255)
gAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCg > 1:3240752/1‑40 (MQ=255)
gAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCg > 1:3170945/1‑40 (MQ=255)
gAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCg > 1:311966/1‑40 (MQ=255)
gAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCg > 1:3534329/1‑40 (MQ=255)
gAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCg > 1:2275037/1‑40 (MQ=255)
gAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCg > 1:2479480/1‑40 (MQ=255)
gAAACGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCg > 1:2341452/1‑40 (MQ=255)
aaaCGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTCCGGGAAAg > 1:4361502/1‑62 (MQ=255)
aaaCGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTCCGGGAAAg > 1:981570/1‑62 (MQ=255)
aaaCGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTCCGGGAAAg > 1:2092157/1‑62 (MQ=255)
aaaCGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTCCGGGAAAg > 1:2140613/1‑62 (MQ=255)
aaaCGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTCCGGGAAAg > 1:2620929/1‑62 (MQ=255)
aaaCGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTCCGGGAAAg > 1:2962832/1‑62 (MQ=255)
aaaCGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTCCGGGAAAg > 1:3591035/1‑62 (MQ=255)
aaaCGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTCCGGGAAAg > 1:3548335/1‑62 (MQ=255)
aaaCGCGTCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTCCGGGAAAg > 1:3291341/1‑62 (MQ=255)
|
GGTGGCGATTCAGTGCATGAACATTGCTGCGAAACGCATCCATCAGCCGCCCGATGGTATCCAGCTCCCGTACGCCAGCGGTTTCCGGGAAAG > W3110S.gb/1055376‑1055468
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
