Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R2
|
164 |
48.3 |
4710601 |
85.3% |
4018142 |
55.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,643,405 |
T→C |
H182H (CAT→CAC) |
creD → |
inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,643,405 | 0 | T | C | 100.0%
| 150.7
/ NA
| 41 | H182H (CAT→CAC) | creD | inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (13/28); total (13/28) |
CGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATAT > W3110S.gb/4643350‑4643455
|
cggCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATccc > 1:3716134/1‑61 (MQ=255)
cggCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATccc > 1:1601688/1‑61 (MQ=255)
cggCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCt < 1:1017897/62‑1 (MQ=255)
gcTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTa > 1:2066490/1‑61 (MQ=255)
gcTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAc > 1:3103525/1‑62 (MQ=255)
gcTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAc > 1:4077855/1‑62 (MQ=255)
gcTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAc > 1:2171620/1‑62 (MQ=255)
gcTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAc > 1:4532405/1‑62 (MQ=255)
gcTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAc > 1:1842160/1‑62 (MQ=255)
gcTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAc > 1:1423580/1‑62 (MQ=255)
gcTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAc > 1:1088311/1‑62 (MQ=255)
cTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAcc < 1:7010/62‑1 (MQ=255)
cTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAcc < 1:508923/62‑1 (MQ=255)
cTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAcc < 1:742033/62‑1 (MQ=255)
cTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAcc < 1:774777/62‑1 (MQ=255)
cTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAcc < 1:4332646/62‑1 (MQ=255)
cTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAcc < 1:3763232/62‑1 (MQ=255)
cTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAcc < 1:3121468/62‑1 (MQ=255)
cTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAcc < 1:1047005/62‑1 (MQ=255)
cTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAcc < 1:2096225/62‑1 (MQ=255)
cTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAcc < 1:2189533/62‑1 (MQ=255)
cTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAcc < 1:2261844/62‑1 (MQ=255)
cTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTAc > 1:425145/1‑61 (MQ=255)
tGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCACATCCCTTTACCt < 1:3145462/62‑1 (MQ=255)
gCAAGGCGGGCAGGGCGGGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGa < 1:568551/62‑1 (MQ=255)
cAAGGCGGGCAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGa < 1:840181/61‑1 (MQ=255)
aGGCGGGCAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGa < 1:2643141/59‑1 (MQ=255)
aGGCGGGCAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGa < 1:408424/59‑1 (MQ=255)
aGGCGGGCAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGa < 1:2986371/59‑1 (MQ=255)
aGGCGGGCAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGa < 1:3714920/59‑1 (MQ=255)
aGGCGGGCAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGa < 1:4521928/59‑1 (MQ=255)
aGGCGGGCAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGa < 1:2011543/59‑1 (MQ=255)
aGGCGGGCAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGa < 1:510526/59‑1 (MQ=255)
aGGCGGGCAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGa < 1:1669148/59‑1 (MQ=255)
aGGCGGGCAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGa < 1:1663679/59‑1 (MQ=255)
ggCGGGCAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGa < 1:3090253/58‑1 (MQ=255)
gggCAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGa < 1:1940182/55‑1 (MQ=255)
cAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGaa > 1:3347964/1‑59 (MQ=255)
cAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGaa > 1:499271/1‑59 (MQ=255)
cAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAatat < 1:4480986/62‑1 (MQ=255)
cAGGGCGTGCACATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAatat < 1:3015344/62‑1 (MQ=255)
|
CGGCGCTGACCATTGAACCCGGCACCGGGTTAGAGCAAGGCGGGCAGGGCGTGCATATCCCTTTACCTGAAGGGGACTGGCGGAAGCAGAACCTGAAGCTGAATAT > W3110S.gb/4643350‑4643455
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
