Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R2
|
154 |
32.4 |
3140800 |
76.4% |
2399571 |
54.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
692,265 |
G→A |
intergenic (‑59/+31) |
ybeX ← / ← ybeY |
predicteed ion transport/conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 692,265 | 0 | G | A | 100.0%
| 178.3
/ NA
| 55 | intergenic (‑59/+31) | ybeX/ybeY | predicteed ion transport/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (28/27); total (28/27) |
TCGTATGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCGGGGACGTCTGCCAGTCAAATGCCTGGCAAATTATTCTTTC > W3110S.gb/692211‑692305
|
tcgtATGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGAc > 1:1740900/1‑60 (MQ=255)
tcgtATGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACg > 1:1200445/1‑61 (MQ=255)
tcgtATGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGt > 1:830327/1‑62 (MQ=255)
tcgtATGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGt > 1:565284/1‑62 (MQ=255)
tcgtATGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGt > 1:3033786/1‑62 (MQ=255)
tcgtATGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGt > 1:3030030/1‑62 (MQ=255)
tcgtATGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGt > 1:29626/1‑62 (MQ=255)
tcgtATGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGt > 1:2584570/1‑62 (MQ=255)
tcgtATGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGt > 1:1983406/1‑62 (MQ=255)
tcgtATGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGt > 1:1353342/1‑62 (MQ=255)
aTGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:1080104/61‑1 (MQ=255)
aTGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:2975748/61‑1 (MQ=255)
aTGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:1899264/61‑1 (MQ=255)
aTGGGTGCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:130742/61‑1 (MQ=255)
ttCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGAc > 1:2192991/1‑51 (MQ=255)
ttCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGt > 1:2881286/1‑61 (MQ=255)
ttCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGt > 1:1096532/1‑61 (MQ=255)
ttagttaATCAAAACGCCGTCGTTAATCACCAAGGGCAGGGACGTCTg < 1:2448685/48‑1 (MQ=255)
ttagttaATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:137107/48‑1 (MQ=255)
ttagttaATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:1213296/48‑1 (MQ=255)
ttagttaATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:1309626/48‑1 (MQ=255)
ttagttaATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:1175182/48‑1 (MQ=255)
ttagttaATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:1764226/48‑1 (MQ=255)
ttagttaATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:1664464/48‑1 (MQ=255)
ttagttaATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:549214/48‑1 (MQ=255)
ttagttaATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:1595207/48‑1 (MQ=255)
ttagttaATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:601698/48‑1 (MQ=255)
ttagttaATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:148803/48‑1 (MQ=255)
ttagttaATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:719945/48‑1 (MQ=255)
ttagttaATCAAAACGCCGTCGTTAATCACCAACGGCAGGGACGTCTg < 1:1379810/48‑1 (MQ=255)
aCGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCa > 1:1939263/1‑42 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGTGACGTCTGCCAGTCAAATGCCTGGCAAATTAttctt < 1:1344470/62‑1 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCa > 1:444732/1‑41 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCa > 1:1059086/1‑41 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCa > 1:2522592/1‑41 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCa > 1:2635078/1‑41 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCa > 1:2631565/1‑41 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCa > 1:2578970/1‑41 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCa > 1:2561684/1‑41 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCa > 1:2427674/1‑41 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCa > 1:2251711/1‑41 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCa > 1:1275542/1‑41 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCa > 1:1414767/1‑41 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCAAATGCCTGGCAAATTAttctt < 1:1182849/62‑1 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCAAATGCCTGGCAAATTAttctt < 1:1170119/62‑1 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCAAATGCCTGGCAAATTAttctt < 1:427528/62‑1 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCAAATGCCTGGCAAATTAttctt < 1:53500/62‑1 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCAAATGCCTGGCAAATTAttctt < 1:1609213/62‑1 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCAAATGCCTGGCAAATTAttctt < 1:1582053/62‑1 (MQ=255)
cGCCGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCAAATGCCTGGCAAATTAttctt < 1:1532390/62‑1 (MQ=255)
ccGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCAAATGCCTGGCAAatt > 1:1894118/1‑54 (MQ=255)
ccGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCAAATGCCTGGCAAATTAttctttc > 1:457089/1‑62 (MQ=255)
ccGTCGTTAATCACCAACGGCAGGGACGTCTGCCAGTCAAATGCCTGGCAAATTAttctt > 1:133471/1‑60 (MQ=255)
gtTAATCACCAACGGCAGGGACGTCTGCCAGTCAAATGCCt < 1:1454643/41‑1 (MQ=255)
gtTAATCACCAACGGCAGGGACGTCTGCCAGTCAAATGCCt < 1:966261/41‑1 (MQ=255)
|
TCGTATGGGTTCTCATGTTAGTTAATCAAAACGCCGTCGTTAATCACCAACGGCGGGGACGTCTGCCAGTCAAATGCCTGGCAAATTATTCTTTC > W3110S.gb/692211‑692305
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
