Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R2
|
90 |
19.5 |
1203533 |
67.3% |
809977 |
57.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,456,354 |
A→T |
D332E (GAT→GAA) |
yfaQ ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,456,354 | 0 | A | T | 100.0%
| 161.9
/ NA
| 51 | D332E (GAT→GAA) | yfaQ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (13/38); total (13/38) |
GGTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGATCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTC > minE/1456309‑1456405
|
ggTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGTTCCAGCACTCTGGCac > 1:792220/1‑61 (MQ=255)
ggTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGTTCCAGAACTCTGGCaa > 1:1035504/1‑62 (MQ=255)
ggTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGTTCCAGAACTCTGGCaa > 1:1035016/1‑62 (MQ=255)
ggTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGTTCCAGAACTCTGGCaa > 1:600398/1‑62 (MQ=255)
ggTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGTTCCAGAACTCTGGCaa > 1:549462/1‑62 (MQ=255)
ggTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGTTCCAGAACTCTGGCaa > 1:499465/1‑62 (MQ=255)
ggTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGTTCCAGAACTCTGGCaa > 1:165317/1‑62 (MQ=255)
ggTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGTTCCAGAACTCTGGCaa > 1:944407/1‑62 (MQ=255)
ggTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGTTCCAGAACTCTGGCaa > 1:374541/1‑62 (MQ=255)
ggTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGTTCCAGAACTCTGGCaa > 1:363229/1‑62 (MQ=255)
ggTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGTTCCAGAACTCTGGCa > 1:1193918/1‑61 (MQ=255)
ggTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGTTCCAGAACTCTGGCa > 1:924166/1‑61 (MQ=255)
ggTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGTTCCAGAACTCTGGCa > 1:360284/1‑61 (MQ=255)
cgccgcGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:291670/61‑1 (MQ=255)
cgccgcGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:739562/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:99248/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:826097/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:818014/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:840200/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:85986/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:92096/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:77981/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:928156/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:952551/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:972602/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:765769/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:75503/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:977739/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:989328/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:696856/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:655007/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:1129868/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:1189311/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:1189437/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:152502/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:157357/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:200656/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:236279/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:238898/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:25070/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:261644/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:267038/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:308066/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:319138/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:351315/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:373422/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:592973/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:598188/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:605439/61‑1 (MQ=255)
cGCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:676521/61‑1 (MQ=255)
gCCTCGCGTTCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTc < 1:843932/60‑1 (MQ=255)
|
GGTCATGGCTTTCGCTGCCTCAGGGGGCGTACTTTTCGCCTCGCGATCCAGAACTCTGGCAACGTACTCTTCACGATCGAGATGCGACTGCAATTTC > minE/1456309‑1456405
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
