Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R2
|
90 |
19.5 |
1203533 |
67.3% |
809977 |
57.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,657,268 |
A→G |
L513L (CTA→CTG) |
ppk → |
polyphosphate kinase, component of RNA degradosome |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,657,268 | 0 | A | G | 100.0%
| 427.7
/ NA
| 117 | L513L (CTA→CTG) | ppk | polyphosphate kinase, component of RNA degradosome |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (117/0); total (117/0) |
Only 100 of 117 total aligned reads displayed.
CGCCGCCTATTGTATGAAATGGTGGACCGCGAGATCGCCAACGCGCAGCAAGGGCTGCCC > minE/1657260‑1657319
|
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGcc > 1:1150376/1‑39 (MQ=38)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCaa > 1:1072571/1‑41 (MQ=255)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCa > 1:48862/1‑40 (MQ=255)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCa > 1:1039736/1‑40 (MQ=255)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGTGCAGCAAGGGCTGccc > 1:370190/1‑60 (MQ=38)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:531396/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:71355/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:706631/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:692147/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:6646/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:634876/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:598810/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:5962/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:576033/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:570468/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:563017/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:550842/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:5477/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:746279/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:514169/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:511722/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:507212/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:498433/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:492719/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:4856/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:445685/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:434567/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:873131/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:974225/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:971475/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:962331/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:959580/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:917083/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:903816/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:899183/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:892096/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:89142/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:886549/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:880884/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:729962/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:871352/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:866769/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:844423/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:841560/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:789425/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:783277/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:781057/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:762053/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:749418/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:100219/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:1128551/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:181597/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:171398/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:143869/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:142052/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:139585/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:130087/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:121163/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:1203070/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:118203/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:1144245/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:1141823/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:420622/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:1122269/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:1120250/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:1114239/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:1106067/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:1058477/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:1038286/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:1017702/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:1015019/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:100822/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:1000247/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:226968/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:421949/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:418211/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:408510/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:385725/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:384455/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:37995/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:377173/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:35117/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:293965/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:284140/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:263463/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:257196/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:24096/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:23885/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:237276/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:232411/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:23151/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:185010/1‑60 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGcc > 1:1008581/1‑59 (MQ=39)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGcac > 1:579516/1‑58 (MQ=38)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGCGCTGccc > 1:986284/1‑60 (MQ=38)
cgccgcCTGTTGTATGAAATGGTGGACCGCGAAATCGCAAACGCgcagc > 1:1067956/1‑49 (MQ=38)
cgccgcCTGTTGTATGAAATGGTGGACAGCGAAATCGCCAACGCGAAGCAAGGGCTGccc > 1:554929/1‑60 (MQ=255)
cgccgcCTGTTGTATGAAATGGAGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:1094315/1‑60 (MQ=38)
cgccgcCTGTTGTATGAAATGCTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:555570/1‑60 (MQ=38)
cgccgcCTGTGGTATGAAATGGTGGACCGCGAAATCGCCAACGCGCAGCAAGGGCTGccc > 1:348639/1‑60 (MQ=38)
|
CGCCGCCTATTGTATGAAATGGTGGACCGCGAGATCGCCAACGCGCAGCAAGGGCTGCCC > minE/1657260‑1657319
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
