Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R2
|
90 |
19.5 |
1203533 |
67.3% |
809977 |
57.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,763,594 |
A→T |
noncoding (250/1542 nt) |
rrsG ← |
16S ribosomal RNA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,763,594 | 0 | A | T | 100.0%
| 135.7
/ NA
| 83 | noncoding (250/1542 nt) | rrsG | 16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (0/83); total (0/83) |
Only 100 of 116 total aligned reads displayed.
GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTT > minE/1763532‑1763655
|
ggCTGGTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTT‑GTGAGCCGTTACCCCACcaaca > 1:743105/1‑62 (MQ=14)
gggTCATCCTCTCAGACCAGCCAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACcaacaa > 1:204332/2‑61 (MQ=255)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:47057/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:65265/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:646543/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:634116/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:592715/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:568658/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:534795/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:513782/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:501487/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:658724/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:465268/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:430869/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:427082/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:39537/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:385239/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:384510/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:369938/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:345890/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:335603/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:828837/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:983848/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:977353/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:970540/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:964980/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:953139/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:934381/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:887103/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:865806/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:862207/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:65594/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:817549/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:813975/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:808535/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:806286/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:72608/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:720721/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:710448/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:708110/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1021955/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1165344/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:199495/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:194948/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:171700/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:167011/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:319027/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:139398/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:126877/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:125909/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1184170/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1174389/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:152681/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1155621/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1148843/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1127182/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1124781/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1060346/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1032448/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1031519/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1027279/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1019923/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:260011/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:299234/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:213640/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:285142/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:218049/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:219469/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:224994/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:233724/61‑3 (MQ=11)
ctcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:264185/61‑3 (MQ=11)
tcAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCATCTAGCTATTccga < 1:250073/60‑3 (MQ=2)
aGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1148326/58‑3 (MQ=11)
ggATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:660922/47‑3 (MQ=11)
ggATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATccga < 1:1093969/47‑3 (MQ=11)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:935102/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:850638/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:263841/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:885834/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:887211/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:420818/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:968807/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:301199/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:328226/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:404875/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:406673/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:788065/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:755333/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:1178666/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:74196/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:734703/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:249870/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:448630/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:652326/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:180778/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:216719/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:625123/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:547725/62‑1 (MQ=31)
aaGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCATCTTTGGTCtt < 1:1128549/62‑1 (MQ=14)
aaGCTAATCCCATCTGGGCACATCCGATCGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCtt < 1:377493/62‑1 (MQ=14)
|
GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTTGGTGAGCCGTTACCCCACCAACAAGCTAATCCCATCTGGGCACATCCGATGGCAAGAGGCCCGAAGGTCCCCCTCTTTGGTCTT > minE/1763532‑1763655
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
