Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I2 R2
|
64 |
60.0 |
3197630 |
92.7% |
2964203 |
60.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,302,608 |
T→C |
K158R (AAG→AGG) |
dacD ← |
D‑alanyl‑D‑alanine carboxypeptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,302,608 | 0 | T | C | 100.0%
| 268.0
/ NA
| 72 | K158R (AAG→AGG) | dacD | D‑alanyl‑D‑alanine carboxypeptidase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (32/40); total (32/40) |
GAGCTATGCTGGCCAGGTGCATCCAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCTTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAATATAGTCAGCCAG > minE/1302542‑1302672
|
gAGCTATGCTGGCCAGGTGCATCCAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCtctc < 1:2597699/71‑1 (MQ=255)
aGCTATGCTGGCCAGGTGCATCCAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCg < 1:1421496/71‑1 (MQ=255)
aTGCTGGCCAGGTGCATCCAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCag > 1:1108206/1‑70 (MQ=255)
gCTGGCCAGGTGCATCCAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCAt < 1:2448311/69‑1 (MQ=255)
cTGGCCAGGTGCATCCAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCg < 1:1420203/64‑1 (MQ=255)
cTGGCCAGGTGCATCCAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCg < 1:2494854/64‑1 (MQ=255)
gCCAGGTGCATCCAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAgttgt < 1:569131/71‑1 (MQ=255)
gCCAGGTGCATCCAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAgttgt < 1:3092503/71‑1 (MQ=255)
aGGTGCATCCAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTtca > 1:115277/1‑71 (MQ=255)
ggTGCATCCAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTtcat > 1:790468/1‑71 (MQ=255)
ggTGCATCCAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTtcat > 1:1274214/1‑71 (MQ=255)
gTGCATCCAGACAATGCACTGTTTCAAAATGCGAATCCTTGAGATGCAGCctct > 1:515322/1‑54 (MQ=255)
cAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAgttgt < 1:644045/59‑1 (MQ=255)
cAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTcaa > 1:801952/1‑71 (MQ=255)
cATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAAc > 1:3002065/1‑71 (MQ=255)
tGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAgttgt < 1:3178225/52‑1 (MQ=255)
tGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACaaa > 1:979102/1‑68 (MQ=255)
tGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACaaa > 1:1202767/1‑68 (MQ=255)
cACTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGc < 1:1389054/70‑1 (MQ=255)
aCTGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGc < 1:3162376/69‑1 (MQ=255)
tGTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAgt < 1:1189374/44‑1 (MQ=255)
gTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTcatcat < 1:1886514/53‑1 (MQ=255)
gTTTCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTg > 1:532072/1‑71 (MQ=255)
tttCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGtt < 1:1326835/69‑1 (MQ=255)
tttCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGtt < 1:2528255/69‑1 (MQ=255)
tttCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTg < 1:705966/70‑1 (MQ=255)
tttCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTg < 1:2732844/70‑1 (MQ=255)
tttCAAAATGCGTATCCTAGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGtt < 1:525028/69‑1 (MQ=255)
ttCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCAttt > 1:3149170/1‑53 (MQ=255)
ttCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCAttt > 1:2906201/1‑53 (MQ=255)
ttCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCAttt > 1:2732824/1‑53 (MQ=255)
ttCAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGc < 1:1456348/70‑1 (MQ=255)
cAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGccc < 1:2989406/70‑1 (MQ=255)
cAAAATGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGccc < 1:2937803/70‑1 (MQ=255)
aaaaTGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTtcat > 1:3152307/1‑45 (MQ=255)
aaaaTGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTtcat > 1:2192333/1‑45 (MQ=255)
aaaaTGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCAc > 1:2534333/1‑71 (MQ=255)
aaaTGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCAcc > 1:1960527/1‑71 (MQ=255)
aaaTGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCAcc > 1:414555/1‑71 (MQ=255)
aaaTGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCAcc > 1:1697682/1‑71 (MQ=255)
aaaTGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCAcc > 1:1805738/1‑71 (MQ=255)
aaaTGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCAcc > 1:2185985/1‑71 (MQ=255)
aaTGCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCg > 1:633698/1‑71 (MQ=255)
gCGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGc > 1:2562047/1‑70 (MQ=255)
cGTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCaa < 1:1300530/71‑1 (MQ=255)
gTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACaaa < 1:2469658/50‑1 (MQ=255)
gTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACaaa < 1:168512/50‑1 (MQ=255)
gTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACaaa < 1:2213156/50‑1 (MQ=255)
gTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACaaa < 1:1494045/50‑1 (MQ=255)
gTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACaaa < 1:1831471/50‑1 (MQ=255)
gTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACaaa < 1:2045255/50‑1 (MQ=255)
gTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACaaa < 1:2017105/50‑1 (MQ=255)
gTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAat < 1:1124330/71‑1 (MQ=255)
gTATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATATCAACAAACTGCCGTTGCCCACCGGCAat < 1:883265/71‑1 (MQ=255)
tATCCTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAata < 1:1128143/71‑1 (MQ=255)
cTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCAc > 1:11790/1‑59 (MQ=255)
cTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCAc > 1:1479844/1‑59 (MQ=255)
cTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCAc > 1:3163872/1‑59 (MQ=255)
cTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCAc > 1:1084040/1‑59 (MQ=255)
cTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCAc > 1:837501/1‑59 (MQ=255)
cTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCAc > 1:1479747/1‑59 (MQ=255)
cTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAATATAGt < 1:420585/71‑1 (MQ=255)
cTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAATATAGt < 1:2311635/71‑1 (MQ=255)
cTTGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAATATAGt < 1:1886441/71‑1 (MQ=255)
ttGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAATATAGt > 1:258648/1‑70 (MQ=255)
ttGAGATGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAATATAGt > 1:2006688/1‑70 (MQ=255)
gagaTGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAATATAGTCa < 1:1345710/70‑1 (MQ=255)
aTGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAATATAGTCAGCCa < 1:1016199/71‑1 (MQ=255)
tGCAGCCTCTCGGCATATTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAATATAGTCAGCCag < 1:1482932/71‑1 (MQ=255)
tGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAATATAGTCAGCCag < 1:3108966/71‑1 (MQ=255)
tGCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAATATAGTCAGCCag < 1:194399/71‑1 (MQ=255)
gCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAatat > 1:261733/1‑60 (MQ=255)
gCAGCCTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAATATAGTCAGCCa > 1:2609525/1‑69 (MQ=255)
|
GAGCTATGCTGGCCAGGTGCATCCAGACCATGCACTGTTTCAAAATGCGTATCCTTGAGATGCAGCTTCTCGGCATAGTTGTTCATCATTTCAACAAACTGCCGTTGCCCACCGGCAATATAGTCAGCCAG > minE/1302542‑1302672
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
