Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
994,478 |
Δ1 bp |
coding (777/792 nt) |
ssuC ← |
alkanesulfonate transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 994,477 | 0 | C | . | 100.0%
| 24.6
/ NA
| 7 | coding (778/792 nt) | ssuC | alkanesulfonate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (7/0); total (7/0) |
CGAGCAGTATTCATACCGTGGCCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGC > W3110S.gb/994453‑994517
|
cGAGCAGTATTCATACCGTGGCCT‑CTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGgcgc > 1:1090654/1‑64 (MQ=255)
cGAGCAGTATTCATACCGTGGCCT‑CTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGgcgc > 1:1139812/1‑64 (MQ=255)
cGAGCAGTATTCATACCGTGGCCT‑CTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGgcgc > 1:1355657/1‑64 (MQ=255)
cGAGCAGTATTCATACCGTGGCCT‑CTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGgcgc > 1:1560105/1‑64 (MQ=255)
cGAGCAGTATTCATACCGTGGCCT‑CTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGgcgc > 1:1643496/1‑64 (MQ=255)
cGAGCAGTATTCATACCGTGGCCT‑CTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGgcgc > 1:2045160/1‑64 (MQ=255)
cGAGCAGTATTCATACCGTGGCCT‑CTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGgcgc > 1:2423641/1‑64 (MQ=255)
|
CGAGCAGTATTCATACCGTGGCCTCCTTCAAATGATAAGCCGGGTTCCAGCGCAACCAGAGGCGC > W3110S.gb/994453‑994517
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
