Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,897,815 |
Δ1 bp |
coding (260/1455 nt) |
ygcU ← |
predicted FAD containing dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,897,814 | 0 | T | . | 100.0%
| 127.3
/ NA
| 30 | coding (261/1455 nt) | ygcU | predicted FAD containing dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (0/30); total (0/30) |
CTACAACAGTTTCCAGCCCACCTTCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTTG > W3110S.gb/2897792‑2897856
|
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCTGTACGCGGCACACCGTTAATTTtg < 1:2212163/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:1221014/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:918210/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:910524/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:903097/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:856107/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:810568/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:809245/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:808839/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:759426/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:742034/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:720235/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:549449/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:367123/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:25264/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:240295/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:2391026/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:2372482/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:2328987/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:2073416/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:2005859/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:1990411/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:1856110/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:1844787/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:174455/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:1606151/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:1459782/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:1019551/64‑1 (MQ=255)
cTACAACAGTTTCCAGCCCACC‑CCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:2410592/64‑1 (MQ=255)
ttCCAGCCCACC‑TCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTtg < 1:592705/54‑1 (MQ=255)
|
CTACAACAGTTTCCAGCCCACCTTCGGTGGCGGAAGCACCGGTACGCGGCACACCGTTAATTTTG > W3110S.gb/2897792‑2897856
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
