Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,351,511 |
A→G |
V457A (GTG→GCG) |
arcB ← |
hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,351,511 | 0 | A | G | 100.0%
| 316.6
/ NA
| 82 | V457A (GTG→GCG) | arcB | hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (0/82); total (0/82) |
CGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATG > W3110S.gb/3351451‑3351558
|
cgaGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTg < 1:2155540/65‑1 (MQ=255)
cgaGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTAC‑‑CCATGACTGTCTTTCGCCTGGt < 1:678761/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGTTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1510288/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1402083/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1706217/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:2049189/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:2072610/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1518072/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:2239029/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1486442/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1486417/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1483527/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:291080/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1455034/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1375105/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:382519/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:50367/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:790905/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1180158/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1145045/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:880303/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1066331/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1052804/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:916214/65‑1 (MQ=255)
agaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1003033/65‑1 (MQ=255)
gaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1012317/64‑1 (MQ=255)
gaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:351738/64‑1 (MQ=255)
gaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1727115/64‑1 (MQ=255)
gaAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1017351/64‑1 (MQ=255)
aaaCGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTTTCTTTCGCCTGGt < 1:209156/63‑1 (MQ=255)
ccAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGt < 1:1304122/52‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:1590420/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:2455661/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:77017/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:2528516/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:81201/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:157618/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:1458299/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:841885/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:745073/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:1994018/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:463028/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:1822634/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:1770577/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:569660/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:1698755/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGTCTATCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:2502024/65‑1 (MQ=255)
ccggtgGCAGGTTTACCGCCATGACTGACTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAg < 1:1269156/65‑1 (MQ=255)
ccGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGaa < 1:567174/64‑1 (MQ=255)
ccGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGaa < 1:1325833/64‑1 (MQ=255)
ccGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGaa < 1:673138/64‑1 (MQ=255)
ccGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGaa < 1:2520825/64‑1 (MQ=255)
ccGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGaa < 1:1516329/64‑1 (MQ=255)
ccGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGaa < 1:223535/64‑1 (MQ=255)
ccGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGaa < 1:824237/64‑1 (MQ=255)
ccGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGaa < 1:2045597/64‑1 (MQ=255)
ccGCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGaa < 1:1995381/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:795371/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:801311/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:1287704/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:860632/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:867481/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:1072264/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:925227/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:971860/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:2163485/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:1725247/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:1654925/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:1818384/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:1832974/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:1934454/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:1587662/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:2107724/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:512406/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:2219718/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:221990/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:2356622/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:2487950/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:1309237/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:391316/64‑1 (MQ=255)
gCCATGACTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGATCATCCTGCGGAATg < 1:1867491/64‑1 (MQ=255)
aCTGTCTTTCGCCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATg < 1:329223/58‑1 (MQ=255)
|
CGAGAAACGGCCAGACCAATACCGGTGCCGGTGGCAGGTTTACCGCCATGACTGTCTTTCACCTGGTAATACATGGCGAAAATTTTATCCAGCTCATCCTGCGGAATG > W3110S.gb/3351451‑3351558
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
