Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I3 R1
|
178 |
99.0 |
1887089 |
95.3% |
1798395 |
63.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
379,608 |
G→A |
I153I (ATC→ATT) |
yaiO ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 379,608 | 0 | G | A | 100.0%
| 201.8
/ NA
| 55 | I153I (ATC→ATT) | yaiO | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (55/0); total (55/0) |
CCACCTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTGATCACCGGGCCAGTATAGA > W3110S.gb/379564‑379627
|
cccccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1180792/4‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTTTAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1442238/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATc > 1:877748/1‑48 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:695533/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:235754/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:236654/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:254410/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:256066/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:277846/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:436440/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:470146/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:507307/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:602839/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:632799/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:663087/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:693604/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1855260/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:729815/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:778943/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:843760/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:875319/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:888974/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:895603/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:90017/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:919593/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:940716/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:981868/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:989548/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1315460/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1065032/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1085950/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1137834/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1157403/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1158696/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1167201/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1183474/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1212290/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1213872/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1238460/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1249997/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1259798/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1314367/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1863453/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1316021/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1338213/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1381895/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1418382/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1521105/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1532345/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1580807/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1667687/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:1773511/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATaga > 1:106405/1‑64 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATag > 1:635721/1‑63 (MQ=255)
ccaccTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTAATCACCGGGCCAGTATag > 1:1651390/1‑63 (MQ=255)
|
CCACCTGCATCGCTGGAGTCATAATGGGTATAGCGGTAGCTGGTGATCACCGGGCCAGTATAGA > W3110S.gb/379564‑379627
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
