Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I3 R1
|
178 |
99.0 |
1887089 |
95.3% |
1798395 |
63.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,230,217 |
A→G |
intergenic (+322/‑104) |
ygjK → / → fadH |
predicted glycosyl hydrolase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,230,217 | 0 | A | G | 100.0%
| 140.5
/ NA
| 38 | intergenic (+322/‑104) | ygjK/fadH | predicted glycosyl hydrolase/2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (38/0); total (38/0) |
TAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAATCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGAA > W3110S.gb/3230164‑3230276
|
tAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAGTccccgc > 1:1347325/1‑58 (MQ=255)
tAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAGTCCCATcac > 1:1293298/1‑63 (MQ=255)
tAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAGTCCCATCACaa > 1:573671/1‑65 (MQ=255)
tAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAGTCCCATCACaa > 1:1795219/1‑65 (MQ=255)
tAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAGTCCCATCACaa > 1:206591/1‑65 (MQ=255)
tAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAGTCCCATCACaa > 1:500365/1‑65 (MQ=255)
tAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAGTCCCATCACaa > 1:555545/1‑65 (MQ=255)
tAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAGTCCCATCACaa > 1:1377504/1‑65 (MQ=255)
tAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAGTCCCATCACaa > 1:1225521/1‑65 (MQ=255)
tAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAGTCCCATCACaa > 1:960920/1‑65 (MQ=255)
tAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAGTCCCATCACaa > 1:99455/1‑65 (MQ=255)
ttttGAGTCCCATCACAACCCCCGCACTCCCCTTTTCCCTTTTCTcc > 1:306790/1‑47 (MQ=39)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCg > 1:1436020/1‑48 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTa > 1:520293/1‑63 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAg > 1:1241605/1‑64 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAg > 1:344529/1‑64 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:804060/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:786025/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:778224/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:1587347/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:844236/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:898423/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:423864/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:1716486/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:1699636/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:1562879/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:1551283/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:1479604/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:1459007/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:1338453/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:133032/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:1308990/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:1291502/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:1221407/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:1083014/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:1080592/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGa > 1:1020511/1‑65 (MQ=255)
ttttGAGTCCCATCACAAACCCCGCACTCCCCTTTTCCC‑TTTCTCCGGCGACGGCTAAATTAGaa > 1:1010542/1‑65 (MQ=255)
|
TAAAACGCGACAAGCGTCGCATCCGGCGTTATCACCGGGCGTATTCTTTTTGAATCCCATCACAAACCCCGCACTCCCCTTTTCCCTTTTCTCCGGCGACGGCTAAATTAGAA > W3110S.gb/3230164‑3230276
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
