Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I3 R1 178 99.0 1887089 95.3% 1798395 63.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA W3110S.gb 3,694,623 T→A noncoding (253/1542 nt) rrsC ← 16S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb3,694,6230TA100.0% 105.6 / NA 190noncoding (253/1542 nt)rrsC16S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (0/190);  total (0/190)

Only 100 of 190 total aligned reads displayed.

TTACCCCACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAAGAGGCCCGAAGGTCCCCCT  >  W3110S.gb/3694613‑3694677
          |                                                      
ttACCCCCCCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:750133/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTCGGCTCATCTGATAGCGTGAGGGCCGAAGATccccca  <  1:1529176/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:350895/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:599573/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:592359/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:560837/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:543663/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:539958/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:521240/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:493407/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:449469/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:43678/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:430951/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:612776/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:350361/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:339998/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:300969/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:266532/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:250900/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:239816/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:227815/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:214555/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1012415/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1846795/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1830502/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:846197/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:992900/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:968884/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:949573/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:939432/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:922783/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:906118/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:886324/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:878283/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:868632/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:853519/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:849567/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1868673/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:81195/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:796859/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:743347/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:719183/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:703331/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:69840/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:655690/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:642215/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:637629/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:628519/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1301693/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1479536/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1815927/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1453006/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1442422/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1430416/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1410133/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1407767/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1406843/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1360231/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1329556/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1319391/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1306046/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1472960/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1283448/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1262230/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1246135/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1228967/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:118727/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1160302/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1136012/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1108840/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1035968/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1027530/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1019893/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1698100/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1805315/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1798281/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1782190/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1766939/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1742430/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1725356/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1718122/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1708576/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1704851/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1500515/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1679948/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1665504/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1609938/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1585169/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1554392/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1517949/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1510350/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGGCCGAAGATccccca  <  1:1632460/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGGGAGGGCCGAAGATccccca  <  1:1052741/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCAACTGATAGCGTGAGGTCCGAAGATccccca  <  1:1337510/65‑2 (MQ=2)
 tACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:357083/64‑2 (MQ=2)
 tACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:401927/64‑2 (MQ=2)
 tACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:874609/64‑2 (MQ=2)
 tACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:19386/64‑2 (MQ=2)
  aCCCCACCAACTAGCTAATCCGAGCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:517260/63‑2 (MQ=2)
   ccccACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGCGGTCCGAAGATccccca  <  1:314062/62‑2 (MQ=2)
          |                                                      
TTACCCCACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAAGAGGCCCGAAGGTCCCCCT  >  W3110S.gb/3694613‑3694677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A