Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
354 |
41.7 |
3110465 |
93.1% |
2895842 |
61.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,837,528 |
G→A |
V100V (GTG→GTA) |
ynjA → |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,837,528 | 0 | G | A | 100.0%
| 78.2
/ NA
| 26 | V100V (GTG→GTA) | ynjA | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (26/0); total (26/0) |
TATCACCAGTATGAAAGTCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTGGCTGACTGGCGGCAAAGCCCGCTC > W3110S.gb/1837471‑1837552
|
tatCACCAGTATGAAAGTCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGAc > 1:697855/1‑64 (MQ=255)
tatCACCAGTATGAAAGTCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACt > 1:2185888/1‑65 (MQ=255)
tatCACCAGTATGAAAGTCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACt > 1:2309805/1‑65 (MQ=255)
tatCACCAGTATGAAAGTCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACt > 1:1589777/1‑65 (MQ=255)
aGTCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTTGCAGTAGCTGACTGGCGGCAAAGCCCGc > 1:2339469/1‑65 (MQ=255)
aGTCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGc > 1:679842/1‑65 (MQ=255)
aGTCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGc > 1:202173/1‑65 (MQ=255)
aGTCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGc > 1:2146116/1‑65 (MQ=255)
aGTCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGc > 1:153191/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:2216656/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:1358176/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:3054923/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:2807072/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:2609930/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:2597995/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:2417628/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:1498656/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:225691/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:2206142/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:2098137/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:1995513/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:1964602/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:1886677/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:1744559/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCTGACTGGCGGCAAAGCCCGctc > 1:1622638/1‑65 (MQ=255)
tCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTAGCAGACTGGCGGCAAAGCCCGct > 1:1271535/1‑64 (MQ=255)
|
TATCACCAGTATGAAAGTCGCCGAGCGCACCGGCAGCAGCGATAAACTGCTGGCAGTGGCTGACTGGCGGCAAAGCCCGCTC > W3110S.gb/1837471‑1837552
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
