Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
354 |
41.7 |
3110465 |
93.1% |
2895842 |
61.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,268,596 |
T→C |
T12A (ACT→GCT) |
yeiW ← |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,268,596 | 0 | T | C | 100.0%
| 206.8
/ NA
| 55 | T12A (ACT→GCT) | yeiW | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (43/12); total (43/12) |
CGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGTGCAACACGCCCCGCAACCCGGACGGCATTCCATACGTTGTTCTCTTAAGGTT > W3110S.gb/2268545‑2268648
|
cGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGcccc > 1:1069656/1‑64 (MQ=255)
cGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGcccc > 1:2516732/1‑64 (MQ=255)
cGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGcccc > 1:2395241/1‑64 (MQ=255)
cGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGcccc > 1:2369075/1‑64 (MQ=255)
cGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGcccc > 1:2345076/1‑64 (MQ=255)
cGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGcccc > 1:1225780/1‑64 (MQ=255)
cGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGcccc > 1:1925318/1‑64 (MQ=255)
cGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGcccc > 1:2922661/1‑64 (MQ=255)
cGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGcccc > 1:1680948/1‑64 (MQ=255)
cGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGcccc > 1:1622059/1‑64 (MQ=255)
cGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGcccc > 1:2697156/1‑64 (MQ=255)
cGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGcccc > 1:1448798/1‑64 (MQ=255)
cGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGccc > 1:254315/1‑63 (MQ=255)
cGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAAATGAAGGGGCAGCGCAACACGcccc > 1:2845467/1‑64 (MQ=255)
cGGGCTTGCCATATGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGcccc > 1:712830/1‑64 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCTGCGCAACACGCCCCGCAACCCgg > 1:1978094/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAacac > 1:1342020/1‑51 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACg > 1:1556933/1‑52 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:2178075/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:2535689/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:2520451/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:1181081/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:2420794/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:1392035/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:2354127/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:503930/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:2277528/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:2273944/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:2263058/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:2209525/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:1334850/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:209953/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:1341392/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:255484/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:195884/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:346207/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:1915520/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:1909317/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:1869336/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:1810322/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:255734/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCgg > 1:2617654/1‑65 (MQ=255)
ccATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGCGCAACACGCCCCGCAACCCg > 1:741491/1‑64 (MQ=255)
aaTTGAAGGGGCAGCGCAACACGCCCCGCAACCCGGACGGCATTCCATACGTTGTTCTCTTAAg < 1:878255/64‑1 (MQ=255)
aaTTGAAGGGGCAGCGCAACACGCCCCGCAACCCGGACGGCATTCCATACGTTGTTCTCTTAAg < 1:1801886/64‑1 (MQ=255)
ttGAAGGGGCAGCGCAACACGCCCCGCAACCCGGACGGCATTCCATACGTTGTTCTCTTAAGGtt < 1:1960506/65‑1 (MQ=255)
ttGAAGGGGCAGCGCAACACGCCCCGCAACCCGGACGGCATTCCATACGTTGTTCTCTTAAGGtt < 1:1711816/65‑1 (MQ=255)
ttGAAGGGGCAGCGCAACACGCCCCGCAACCCGGACGGCATTCCATACGTTGTTCTCTTAAGGtt < 1:1525088/65‑1 (MQ=255)
ttGAAGGGGCAGCGCAACACGCCCCGCAACCCGGACGGCATTCCATACGTTGTTCTCTTAAGGtt < 1:1244884/65‑1 (MQ=255)
ttGAAGGGGCAGCGCAACACGCCCCGCAACCCGGACGGCATTCCATACGTTGTTCTCTTAAGGtt < 1:1240845/65‑1 (MQ=255)
ttGAAGGGGCAGCGCAACACGCCCCGCAACCCGGACGGCATTCCATACGTTGTTCTCTTAAGGtt < 1:122717/65‑1 (MQ=255)
ttGAAGGGGCAGCGCAACACGCCCCGCAACCCGGACGGCATTCCATACGTTGTTCTCTTAAGGtt < 1:1210499/65‑1 (MQ=255)
ttGAAGGGGCAGCGCAACACGCCCCGCAACCCGGACGGCATTCCATACGTTGTTCTCTTAAGGtt < 1:1186448/65‑1 (MQ=255)
ttGAAGGGGCAGCGCAACACGCCCCGCAACCCGGACGGCATTCCATACGTTGTTCTCTTAAGGtt < 1:1185829/65‑1 (MQ=255)
ttGAAGGGGCAGCGCAACACGCCCCGCAACCCGGACGGCATTCCATACGTTGTTCTCTTAAGGtt < 1:1027210/65‑1 (MQ=255)
|
CGGGCTTGCCATCTGGCATACCGGGAATAGGGCTGGAAATTGAAGGGGCAGTGCAACACGCCCCGCAACCCGGACGGCATTCCATACGTTGTTCTCTTAAGGTT > W3110S.gb/2268545‑2268648
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
