Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,867,615 |
G→A |
T429I (ACC→ATC) |
ygcU ← |
predicted FAD containing dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,867,615 | 0 | G | A | 100.0%
| 166.8
/ NA
| 48 | T429I (ACC→ATC) | ygcU | predicted FAD containing dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (6/42); total (6/42) |
CTCCAGTGAACGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGGTTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTCCTC > minE/1867552‑1867667
|
cTCCAGTGAACGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATttctt < 1:441650/70‑1 (MQ=255)
cTCCAGTGAACGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATttctt < 1:2799985/70‑1 (MQ=255)
aaCGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAgatg < 1:833899/70‑1 (MQ=255)
aaCGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAgatg < 1:1076309/70‑1 (MQ=255)
aaCGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAgatg < 1:498268/70‑1 (MQ=255)
aaCGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAgatg < 1:360137/70‑1 (MQ=255)
aaCGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAgatg < 1:2412324/70‑1 (MQ=255)
aaCGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAgatg < 1:2276348/70‑1 (MQ=255)
aaCGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAgatg < 1:2006606/70‑1 (MQ=255)
aaCGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAgatg < 1:2005122/70‑1 (MQ=255)
aaCGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAgatg < 1:1566378/70‑1 (MQ=255)
aaCGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAgatg < 1:1520769/70‑1 (MQ=255)
aaCGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAgatg < 1:133355/70‑1 (MQ=255)
aaCGCGATGTTTACCGATACCGGGGTGGTGCACCATCGAACCGCCGAGCCGAATGATTTCTTCACAgatg < 1:1103560/70‑1 (MQ=255)
aCGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAgatg < 1:2999236/69‑1 (MQ=255)
tACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAg < 1:1239220/70‑1 (MQ=255)
tACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAg < 1:2843248/70‑1 (MQ=255)
tACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAg < 1:2324734/70‑1 (MQ=255)
tACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAg < 1:2690831/70‑1 (MQ=255)
tACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAg < 1:1301707/70‑1 (MQ=255)
gATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGAt < 1:1597900/71‑1 (MQ=255)
gATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGAt < 1:761243/71‑1 (MQ=255)
gATACCGTGGTGGTGCACCATCGAACCGCCGACGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGAt < 1:2276729/71‑1 (MQ=255)
tgtggtgCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAgatg < 1:2843158/46‑1 (MQ=255)
gtggtgCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACt > 1:1747829/1‑71 (MQ=255)
gtggtgCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACt > 1:489245/1‑71 (MQ=255)
ttgtgCACCATCGAACCGCCGAGGCGAATGATTTCTTCACAgatg < 1:2392048/43‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:433044/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:1519447/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:729795/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:645005/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:825927/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:1271359/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:480597/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:1512334/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:441112/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:1261694/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:3277953/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:3095556/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:3017105/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:2203279/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:2987824/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:2936725/71‑1 (MQ=255)
aTCGAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTc < 1:2890905/71‑1 (MQ=255)
gAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTCctc > 1:2619687/1‑71 (MQ=255)
gAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTCctc > 1:810700/1‑71 (MQ=255)
gAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTCctc > 1:1118528/1‑71 (MQ=255)
gAACCGCCGAGGCGAATGATTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTCctc > 1:2901280/1‑71 (MQ=255)
|
CTCCAGTGAACGCGATGTTTACCGATACCGTGGTGGTGCACCATCGAACCGCCGAGGCGAATGGTTTCTTCACAGATGATCTTGTTGAGCGGATTGTGGTACTTGTCGATTTCCTC > minE/1867552‑1867667
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
