Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,516,656 |
C→T |
A102T (GCT→ACT) |
trmH ← |
tRNA (Guanosine‑2'‑O‑)‑methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,516,656 | 0 | C | T | 100.0%
| 137.1
/ NA
| 42 | A102T (GCT→ACT) | trmH | tRNA (Guanosine‑2'‑O‑)‑methyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (12/30); total (12/30) |
AAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGCGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCA > minE/2516610‑2516717
|
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAGATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:1530038/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:87756/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:851593/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:638459/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:502249/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:496753/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:1622013/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:3185965/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:288423/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:1971525/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:243188/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:2225114/1‑68 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:1165058/71‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:963953/71‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:3214175/71‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:2576710/71‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:1151505/71‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:2058534/71‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:1171011/71‑1 (MQ=255)
aGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:1942863/70‑1 (MQ=255)
aGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:3003286/70‑1 (MQ=255)
ggCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:1470193/64‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:1873363/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:913375/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:813159/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:658885/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:1427599/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:630046/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:506682/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:1560866/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:2185346/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:192392/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:3067464/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:2717260/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:2508186/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:2351812/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:2086784/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCGGGCCTTTGAGATGAGCGACGGc < 1:2961677/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGGGTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:246058/71‑1 (MQ=255)
aaaTCGACAGTGTTATCAGAAAGATGGCTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGc < 1:1344893/71‑1 (MQ=255)
aaTCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCa < 1:1994234/71‑1 (MQ=255)
cGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:689327/37‑1 (MQ=255)
|
AAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGCGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATGAGCGACGGCA > minE/2516610‑2516717
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
