Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,516,656 |
C→T |
A102T (GCT→ACT) |
trmH ← |
tRNA (Guanosine‑2'‑O‑)‑methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,516,656 | 0 | C | T | 100.0%
| 338.2
/ NA
| 103 | A102T (GCT→ACT) | trmH | tRNA (Guanosine‑2'‑O‑)‑methyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (23/80); total (23/80) |
Only 100 of 103 total aligned reads displayed.
CCGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGCGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATG > minE/2516590‑2516707
|
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:4369154/71‑1 (MQ=255)
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:2718320/71‑1 (MQ=255)
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:2452548/71‑1 (MQ=255)
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:2910522/71‑1 (MQ=255)
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:4327944/71‑1 (MQ=255)
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:303004/71‑1 (MQ=255)
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:4373883/71‑1 (MQ=255)
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:1753051/71‑1 (MQ=255)
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:3274420/71‑1 (MQ=255)
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:164528/71‑1 (MQ=255)
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:1489289/71‑1 (MQ=255)
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:3219975/71‑1 (MQ=255)
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:844452/71‑1 (MQ=255)
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:1121755/71‑1 (MQ=255)
ccGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGACTGTAATCAATTTCGCGGAAATCGACAGTGTTa < 1:1554987/71‑1 (MQ=255)
tctcCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGa < 1:4233458/70‑1 (MQ=255)
tctcCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGa < 1:1651980/70‑1 (MQ=255)
tctcCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGa < 1:520327/70‑1 (MQ=255)
tctcCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGa < 1:2873813/70‑1 (MQ=255)
cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGaaa < 1:812516/68‑1 (MQ=255)
cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGaaa < 1:3179886/68‑1 (MQ=255)
cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGaaa < 1:3521574/68‑1 (MQ=255)
cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGaaa < 1:3453717/68‑1 (MQ=255)
cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGaaa < 1:2765742/68‑1 (MQ=255)
cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGAt > 1:3361121/1‑71 (MQ=255)
cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGAt > 1:3988082/1‑71 (MQ=255)
cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGAt > 1:2733792/1‑71 (MQ=255)
cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGAt > 1:1003530/1‑71 (MQ=255)
cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGAt > 1:2185520/1‑71 (MQ=255)
cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGAt > 1:2987965/1‑71 (MQ=255)
cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGAt > 1:2007953/1‑71 (MQ=255)
cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGAt > 1:3328099/1‑71 (MQ=255)
cTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGAt > 1:735483/1‑71 (MQ=255)
cTGTCACATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGa > 1:3009389/1‑70 (MQ=255)
tCCCATCAAAATGCACGTCGGGCGAGTGTAATCAATTTGGCGGAAATCGACAGTGTTa < 1:428894/58‑1 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTg > 1:637619/1‑67 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:516576/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:4195254/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:2910636/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:4148116/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:2904277/1‑68 (MQ=255)
aaaaTGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGc > 1:493709/1‑68 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCTCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:3198787/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAGATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:2848152/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:2706852/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:1167666/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:3171573/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:3165773/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:1349688/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:1711078/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:1793274/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:1893776/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:1988668/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:4241932/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:217075/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:2279876/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:404641/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:2431534/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:2799990/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:3393629/70‑1 (MQ=255)
cAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:271513/71‑1 (MQ=255)
aGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:3643202/69‑1 (MQ=255)
aGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:984684/69‑1 (MQ=255)
aGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:2386233/70‑1 (MQ=255)
cGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:4067349/65‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:1397251/71‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:1777738/71‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:1925978/71‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:4250358/71‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:77795/71‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:118896/71‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:1132941/71‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:4119362/71‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:4114299/71‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:2344167/71‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:2382214/71‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:2451981/71‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:350429/71‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:3014226/71‑1 (MQ=255)
gCGAGTGTAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCt < 1:311362/71‑1 (MQ=255)
tgtAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCt < 1:4041775/71‑1 (MQ=255)
tgtAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCt < 1:3647558/71‑1 (MQ=255)
tgtAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCt < 1:2226270/71‑1 (MQ=255)
tgtAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCt < 1:3397491/71‑1 (MQ=255)
tgtAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCt < 1:2107594/71‑1 (MQ=255)
gtAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATTGGTTGCCAGAATCTGCATGCCCTGGCCt < 1:2969728/70‑1 (MQ=255)
tAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:2494068/56‑1 (MQ=255)
tAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:2588391/56‑1 (MQ=255)
tAATCAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTg < 1:1215352/56‑1 (MQ=255)
cAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCttt > 1:1280595/1‑67 (MQ=255)
cAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCttt > 1:101103/1‑67 (MQ=255)
cAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCttt > 1:213233/1‑67 (MQ=255)
cAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCttt > 1:2326050/1‑67 (MQ=255)
cAATTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCttt > 1:3089412/1‑67 (MQ=255)
aTTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATg < 1:1307328/71‑1 (MQ=255)
aTTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATg < 1:1512387/71‑1 (MQ=255)
aTTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATg < 1:213633/71‑1 (MQ=255)
aTTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATg < 1:8975/71‑1 (MQ=255)
aTTTCGCGGAAATCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATg < 1:900250/71‑1 (MQ=255)
tCGACAGTGTTATCAGAAAGATGGGTTGCCAGAATCt < 1:2212510/37‑1 (MQ=255)
|
CCGTTTTCTCCTGTCCCATCAAAATGCAGGTCGGGCGAGTGTAATCAATTTCGCGGAAATCGACAGCGTTATCAGAAAGATGGGTTGCCAGAATCTGCATGCCCTGGCCTTTGAGATG > minE/2516590‑2516707
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
