Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R2
|
328 |
63.0 |
4687567 |
98.0% |
4593815 |
65.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,210,013 |
T→C |
L102P (CTG→CCG) |
ymfS → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,210,013 | 0 | T | C | 100.0%
| 160.8
/ NA
| 47 | L102P (CTG→CCG) | ymfS | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (27/20); total (27/20) |
GATTTTATCAATAGCAGACAGTGGCAGGGTAAGGCTGCATTGGGAAGACTTAAAGAAGATGAGCTGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATCCAGTGCGC > W3110S.gb/1209949‑1210078
|
gATTTTATCAATAGCAGACAGTGGCAGGGTAAGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAAc > 1:1577002/1‑70 (MQ=255)
ttATCAATAGCAGACAGTGGCAGGGTAAGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAata > 1:4485260/1‑70 (MQ=255)
gCAGACAGTGGCAGGGTAAGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTgg > 1:4225885/1‑71 (MQ=255)
gACAGTGGCAGGGTAAGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTg < 1:3640493/71‑1 (MQ=255)
gTGGCAGGGTAAGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGAtt < 1:3793665/71‑1 (MQ=255)
ggCAGGGTAAGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTa > 1:2874022/1‑70 (MQ=255)
gTAAGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTgg > 1:4088673/1‑69 (MQ=255)
gTAAGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTgg > 1:3127358/1‑69 (MQ=255)
tAAGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAg > 1:1643773/1‑71 (MQ=255)
tAAGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAg > 1:2628502/1‑71 (MQ=255)
tAAGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAg > 1:4040110/1‑71 (MQ=255)
tAAGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAg > 1:1266635/1‑71 (MQ=255)
aaGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAg > 1:1137816/1‑70 (MQ=255)
aGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTg > 1:2293133/1‑56 (MQ=255)
aGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGc < 1:2736042/70‑1 (MQ=255)
aGGCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGc < 1:2437774/70‑1 (MQ=255)
ggCTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGa < 1:1378594/66‑1 (MQ=255)
gCTGCATTGGGAAGACTT‑AAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACt < 1:1436843/70‑1 (MQ=25)
cTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCa > 1:2532634/1‑68 (MQ=255)
cTGCATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCa > 1:2492587/1‑68 (MQ=255)
cATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTgg < 1:2533996/69‑1 (MQ=255)
cATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTgg < 1:3696711/69‑1 (MQ=255)
cATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTgg < 1:4592924/69‑1 (MQ=255)
cATTGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTgg < 1:3663730/69‑1 (MQ=255)
ttGGGAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCa < 1:2312720/63‑1 (MQ=255)
gggAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTgg > 1:4344313/1‑71 (MQ=255)
gggAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTgg > 1:1299676/1‑71 (MQ=255)
gggAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTgg > 1:1372694/1‑71 (MQ=255)
gggAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTgg > 1:1811054/1‑71 (MQ=255)
gggAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTgg > 1:2197127/1‑71 (MQ=255)
gggAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTgg > 1:2202432/1‑71 (MQ=255)
gggAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTg > 1:2569325/1‑70 (MQ=255)
gAAGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGtt < 1:534280/71‑1 (MQ=255)
aaGACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGtt < 1:812299/70‑1 (MQ=255)
gACTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGc < 1:4131062/55‑1 (MQ=255)
aCTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGa < 1:3540652/51‑1 (MQ=255)
cTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATa > 1:270397/1‑70 (MQ=255)
cTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATa > 1:492882/1‑70 (MQ=255)
cTTAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATa > 1:1958381/1‑70 (MQ=255)
ttAAAGAAGATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACa > 1:167038/1‑71 (MQ=255)
aagaagATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATcc < 1:3035860/71‑1 (MQ=255)
aagaagATGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATcc < 1:861719/71‑1 (MQ=255)
agaagaTGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATcc < 1:1350686/70‑1 (MQ=255)
gaTGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGc < 1:544317/44‑1 (MQ=255)
gaTGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATCCAGTgc > 1:3640373/1‑71 (MQ=255)
gaTGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATCCAGTgc > 1:1431297/1‑71 (MQ=255)
tGAGCCGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATCCAGTgcgc < 1:3462538/71‑1 (MQ=255)
|
GATTTTATCAATAGCAGACAGTGGCAGGGTAAGGCTGCATTGGGAAGACTTAAAGAAGATGAGCTGAAACAATATAATTTGTGGCTGGATTATCTGGAAGCACTGGAACTGGTTGATACATCCAGTGCGC > W3110S.gb/1209949‑1210078
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
